BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479967
Length=2274
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24550.1 | Symbols: ATPERK1, PERK1 | proline extensin-like r... 3293 0.0
AT3G24540.1 | Symbols: | Protein kinase superfamily protein | ... 878 0.0
AT3G24400.1 | Symbols: | pseudogene, protein kinase family, co... 135 1e-30
> AT3G24550.1 | Symbols: ATPERK1, PERK1 | proline extensin-like
receptor kinase 1 | chr3:8960258-8963568 FORWARD LENGTH=2377
Length=2377
Score = 3293 bits (1783), Expect = 0.0
Identities = 2090/2233 (94%), Gaps = 41/2233 (2%)
Strand=Plus/Plus
Query 1 CCATTGTCCAAATTCCTTA-C--CAAAAAACTCTACTCTCGGTGGCACCAGATCActcct 57
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 CCATTGTCCAAATTCCTTATCAAAAAAAAACTCTACTCTCGGTGGCACCAGATCACTCCT 60
Query 58 cctctctcttctcctacctttttcacattctcttcttcttctctttctc-tcGTG----A 112
|||||||||||||||||||||||||||||||||||||| | || ||||| | | | |
Sbjct 61 CCTCTCTCTTCTCCTACCTTTTTCACATTCTCTTCTTC-T-TC-TTCTCGT-GAGAAAAA 116
Query 113 -AAA-AGAGATTCTTTATTCATTAGATCGAAGAAGCAAAAATGTCCACAGCGCCGTCTCC 170
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 117 GAAAGAGAGATTCTTTATTCATTAGATC---GAAGCAAAAATGTCCACAGCGCCGTCTCC 173
Query 171 AGGCACTActccat---ca---cca---tctcctcccacaaactcaacaaccaccactcc 221
|||||||||||||| || ||| ||||||||||||||||| ||||||||||||||
Sbjct 174 AGGCACTACTCCATCACCATCTCCACCGTCTCCTCCCACAAACTCGACAACCACCACTCC 233
Query 222 tcct-c--catcttcctctcctcctcccaccacaactccttcttctcctccGCCGCCGCC 278
|||| | || | || ||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 234 TCCTCCAGCAGCCTCTTCTCCTCCTCCCACCACAACTCCTTCTTCTCCTCCTCCGTCGCC 293
Query 279 GTCAACTAATTCAACCActcctcctccttcttctcctttacctccttctcttcctcctcc 338
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GTCAACTAATTCAACCTCTCCTCCTCCTTCTTCTCCTTTACCTCCTTCTCTTCCTCCTCC 353
Query 339 atctcctcctggatcttccactcctcctcttcctcaaccttctccctccgctcccatcac 398
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 354 ATCTCCTCCTGGATCTTTAACTCCTCCTCTTCCTCAACCTTCCCCCTCCGCTCCCATCAC 413
Query 399 tccatctccaccgtctccttccactcctGGATCAAACCCTCGAAGCCCTCCATCTCCTAA 458
||| |||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 414 TCCTTCTCCACCGTCTCCCACCACACC---CTCAAACCCTCGAAGCCCTCCATCTCCTAA 470
Query 459 CCAAGGACCACCAAACACTCCCTCAGGACCTACTCCTCGAACTCCATCTAACGCTAATCC 518
|||||||||||||||||||||||||||| |||||||| |||||||||| ||| |||| ||
Sbjct 471 CCAAGGACCACCAAACACTCCCTCAGGATCTACTCCTAGAACTCCATCAAACACTAAACC 530
Query 519 TTCGCCGCCGTCTGGTTCTTCCGATGGATTATCTACAGGAGTGGTCGTTGGAATCGCCAT 578
||||||||||||| ||||||||||||||| ||||| ||||| || || |||||||||||
Sbjct 531 GTCGCCGCCGTCTGATTCTTCCGATGGATTGTCTACCGGAGTTGTGGTAGGAATCGCCAT 590
Query 579 TGGAGGAGTTGTTGCCCTTGTTGTATTGACTCTGATTTGTCTTCTCTGTAAGAAGAAACG 638
||||||||| | | |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 591 TGGAGGAGTCGCTATTCTTGTTATACTGACTCTGATTTGTCTTCTCTGTAAGAAGAAACG 650
Query 639 AAGAAGAAGACATGACGATGAAGCTGCTTACTATGTTCCTCCTCCACCTCCTCCTTCTGG 698
|||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 651 AAGAAGAAGACACGACGATGAAGCTGCTTACTATGTTCCTCCT---CCTCCTCCATCTGG 707
Query 699 TCCCAAAGCTGGAGGACCTTACGGTGGACAACAACAGTATTGGCAACAACAAAACGCATC 758
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 708 TCCCAAAGCTGGAGGACCTTACGGTGGTCAACAACAGTATTGGCAACAACAAAACGCGTC 767
Query 759 ACGACCGTCAGATAATCACGTAGTGACGTCATTGCCACCACCTAAGCCTCCATCTCCACC 818
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ACGGCCGTCAGATAATCATGTAGTGACGTCATTGCCACCACCTAAGCCTCCATCTCCACC 827
Query 819 ACGAAAACCTCCACCGCCTCCTCCACCACCGGCATTCATGAGCAGCAGTGGCGGTTCTGA 878
|||||||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 828 ACGAAAACCTCCTCCGCCACCTCCACCACCAGCATTCATGAGTAGCAGTGGTGGTTCTGA 887
Query 879 CTATTCGGATCTTCCGGTTCTTCCTCCACCATCTCCAGGGCTTGTGTTAGGATTTTCTAA 938
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 888 CTATTCGGATCTTCCGGTTCTTCCTCCACCATCTCCAGGGCTTGTGTTAGGCTTTTCTAA 947
Query 939 AAGCACTTTCACTTATGAGGAGCTGTCAAGAGCTACTAATGGCTTCTCTGAGGCTAATTT 998
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 948 AAGCACTTTCACTTATGAGGAGTTGTCGAGAGCTACTAATGGCTTCTCTGAGGCTAATTT 1007
Query 999 GTTGGGACAAGGCGGGTTTGGTTATGTGCATAAAGGTATATTGCCTAGTGGGAAAGAAGT 1058
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GTTAGGACAAGGAGGGTTTGGTTATGTGCATAAAGGTATATTGCCTAGTGGGAAAGAAGT 1067
Query 1059 TGCTGTGAAACAGTTGAAAGCTGGAAGTGGTCAGGGAGAGAGAGAGTTTCAGGCTGAGGT 1118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1068 TGCTGTGAAACAGTTGAAAGCTGGTAGTGGTCAGGGAGAGAGAGAGTTTCAGGCTGAGGT 1127
Query 1119 CGAGATTATTAGCAGAGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTGTATGGC 1178
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TGAGATCATTAGCAGAGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTGTATGGC 1187
Query 1179 CGGTGTTCAGAGATTGCTTGTCTATGAGTTTGTCCCCAACAACAATCTTGAGTTTCACCT 1238
||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1188 CGGTGTTCAAAGATTACTTGTCTATGAGTTTGTTCCAAACAACAATCTTGAGTTTCACCT 1247
Query 1239 CCATGGGAAGGGACGACCTACGATGGAATGGAGTACTAGATTGAAGATTGCTCTTGGATC 1298
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 CCATGGTAAGGGACGGCCTACGATGGAATGGAGTACTAGATTGAAGATTGCTCTTGGATC 1307
Query 1299 TGCTAAAGGACTTTCATATCTTCATGAAGACTGCAATCCGAAAATCATTCACCGTGATAT 1358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1308 TGCTAAAGGACTTTCATATCTTCATGAAGATTGCAATCCGAAAATCATTCACCGTGATAT 1367
Query 1359 TAAGGCGGCAAATATACTTG-TAGATTTCAAGTTTGAAGCTAAGGTTGCTGATTTTGGTC 1417
||||||| |||| ||| ||| | |||||||| |||||||||||||||||||| |||||||
Sbjct 1368 TAAGGCGTCAAACATA-TTGATTGATTTCAAATTTGAAGCTAAGGTTGCTGACTTTGGTC 1426
Query 1418 TTGCCAAGATTGCTTCTGATACAAACACTCATGTATCTACACGCGTGATGGGAACCTTTG 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 TTGCCAAGATTGCTTCTGATACAAACACTCATGTATCTACACGCGTGATGGGAACCTTTG 1486
Query 1478 GGTATTTGGCTCCAGAATATGCTGCAAGCGGAAAGCTCACAGAAAAGTCTGACGTTTTCT 1537
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1487 GGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGACGTTTTCT 1546
Query 1538 CATTTGGTGTTGTACTTTTGGAGCTTATAACCGGGAGGCGCCCTGTTGATGCAAACAATG 1597
||||||| |||||||||||||| ||||| || |||||||||||||||||||| |||||||
Sbjct 1547 CATTTGGCGTTGTACTTTTGGAACTTATTACTGGGAGGCGCCCTGTTGATGCGAACAATG 1606
Query 1598 TCTATGTAGATGACAGCTTAGTTGACTGGGCACGTCCCTTACTTAACCGAGCATCTGAGG 1657
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 1607 TCTATGTAGATGACAGCTTAGTTGACTGGGCACGACCATTGCTTAACCGAGCATCTGAGG 1666
Query 1658 AAGGAGATTTTGAGGGTTTGGCTGATTCAAAGATGGGTAACGAGTATGACAGAGAGGAAA 1717
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1667 AAGGAGATTTTGAGGGTTTGGCTGATTCAAAGATGGGTAATGAGTATGACAGAGAGGAGA 1726
Query 1718 TGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTC 1777
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1727 TGGCTCGCATGGTTGCTTGCGCTGCGGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTC 1786
Query 1778 GCATGAGCCAGATAGTACGCGCCTTAGAAGGAAATGTATCGCTGTCTGATCTTAACGAAG 1837
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1787 GCATGAGCCAGATAGTACGGGCGTTAGAAGGAAATGTATCGCTGTCTGATCTTAACGAAG 1846
Query 1838 GGATGAGACCAGGTCACAGCAACGTCTACAGCTCATATGGAGGAAGCACAGACTATGACA 1897
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1847 GGATGAGACCGGGTCACAGCAACGTATACAGCTCATATGGAGGAAGCACAGACTATGACA 1906
Query 1898 CAAGCCAATACAACGACGACATGAAAAAGTTTAGGAAAATGGCACTAGGAACTCAAGAAT 1957
| |||||||||||||||||||||| |||||||||||||||||| || |||||||||||||
Sbjct 1907 CGAGCCAATACAACGACGACATGATAAAGTTTAGGAAAATGGCTCTTGGAACTCAAGAAT 1966
Query 1958 ACGGCACAACCGGCGAGTACAGTAATCCAACAAGTGACTACGGACTGTACCCATCTGGTT 2017
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1967 ACGGCACAACCGGCGAGTACAGTAATCCAACCAGTGACTACGGACTGTACCCGTCTGGTT 2026
Query 2018 CGAGCAGCGAGGGTCAAGCCACACGAGAAATGGAGATGGGGAAGATTaaaaaaaCTGGTC 2077
| ||||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 2027 CAAGCAGTGAAGGTCAAGCCACACGAGAAATGGAGATGGGAAAGATTAAGAAAACCGGTC 2086
Query 2078 AAGGTTATAGTGGACCTTCTCTTTAAACCACAAGAGATG-AGAAAATTGCAGGGGTTTTT 2136
|||||||||||||||| ||||||||||||| ||||| || ||||| ||||||| |||||
Sbjct 2087 AAGGTTATAGTGGACCCTCTCTTTAAACCATAAGAG-TGGAGAAA-TTGCAGGTTTTTTT 2144
Query 2137 -GGATTCTTTTTCTTATTAACTGTAAAGATTTGAGGAAATTGCCTTACTCTCTAATTGAT 2195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 TGGATTCTTTTTCTTATTAACTGTAAAGATTTGAGGAAATTGCCTTACTCTCTAATTGAT 2204
Query 2196 CTACTACGATATA 2208
||||||||||||
Sbjct 2205 TTACTACGATATA 2217
> AT3G24540.1 | Symbols: | Protein kinase superfamily protein
| chr3:8952903-8955621 FORWARD LENGTH=1530
Length=1530
Score = 878 bits (475), Expect = 0.0
Identities = 790/939 (84%), Gaps = 34/939 (4%)
Strand=Plus/Plus
Query 938 AAAGCACTTTCACTTATGAGGAGCT-GTCAAGAGCTACTAATGGCTTCTCTGAGGCTAAT 996
|||||||||||||||| | |||||| | | ||||| || ||| ||||||||||| |||
Sbjct 491 AAAGCACTTTCACTTACGGGGAGCTAG-CTAGAGCCACCAATAAATTCTCTGAGGCCAAT 549
Query 997 TTGTTGGGACAAGGCGGGTTTGG-TTATGTGCATAAAGGTATATTGCCTAGTGGGAAA-G 1054
||||| ||| | || || ||||| || || | |||||||||||| || | ||||| |
Sbjct 550 TTGTTAGGAGAGGGTGGATTTGGATT-CGTATACAAAGGTATATTGAATAAT-GGAAATG 607
Query 1055 AAGTTGCTGTGAAACAGTTGAAAGCT-GGAAGTGGTCAGGGAGAGAGAGAGTTTCAGGCT 1113
||||||| || ||||||||||||| | || |||| |||||| |||| |||||||||||||
Sbjct 608 AAGTTGCAGTTAAACAGTTGAAAG-TAGGGAGTGCTCAGGGTGAGAAAGAGTTTCAGGCT 666
Query 1114 GAGGTCGAGATTATTAG-CAGAGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTG 1172
||||| | |||||||| || | |||| || ||| |||||||||| ||| | ||||||||
Sbjct 667 GAGGTTAATATTATTAGCCA-AATTCACCATAGGAATTTGGTTTCCCTTGTCGGTTATTG 725
Query 1173 TATGGCCGGTGTTCAGAGATTGCTTGTCTATGAGTTTGTCCCCAACAACAATCTTGAGTT 1232
|| || |||| ||| ||||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 726 CATCGCTGGTGCTCAAAGATTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTT 785
Query 1233 TCACCTCCATGGGAAGGGACGACCTACGATGGAATGGAGTACT-AGATTGAAGATTGCTC 1291
||||||||||||||| ||||| |||||||||||||||||| | ||||| |||||||||
Sbjct 786 TCACCTCCATGGGAAAGGACGGCCTACGATGGAATGGAGT-TTAAGATTAAAGATTGCTG 844
Query 1292 TTGGATCTGCTAAAGGACTT-TCATATCTTCATGAAGACTGCAATCCGAAAATCATTCAC 1350
| | ||| | |||||| || || |||||||||||| | |||||||| |||||||| |||
Sbjct 845 TCAGTTCTTCCAAAGGA-TTGTCTTATCTTCATGAAAATTGCAATCCTAAAATCATCCAC 903
Query 1351 CGTGATATTAAGGCGGCAAATATACTTG-TAGATTTCAAGTTTGAAGCTAAGGTTGCTGA 1409
|||||||| ||||||||||| ||| ||| | |||||||| |||||||| |||||||||||
Sbjct 904 CGTGATATCAAGGCGGCAAACATA-TTGATTGATTTCAAATTTGAAGCAAAGGTTGCTGA 962
Query 1410 TTTTGGTCTTGCCAAGATTGCTTCT-GATACAAACACTCATGTATCTACACGCGTGATGG 1468
||||||||| ||||||||||||| | |||||||||||||||||||||||||| || ||||
Sbjct 963 TTTTGGTCTCGCCAAGATTGCTT-TGGATACAAACACTCATGTATCTACACGTGTTATGG 1021
Query 1469 GAACCTTTGGGTATTTGGCTCCAGAATATGCTGCAAGCGGAAAGCTCACAGAAAAGTCTG 1528
|||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||
Sbjct 1022 GAACCTTTGGGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTTACTGAAAAGTCTG 1081
Query 1529 ACGTTTTCTCATTTGGTGTTGTACTTTTGGAGCTTATAACCGGGA-GGCGCCCTGTTGAT 1587
| |||| |||||| || ||||||||||||||||| |||| ||||| | ||||||||||||
Sbjct 1082 ATGTTTACTCATTCGGCGTTGTACTTTTGGAGCTAATAA-CGGGACGTCGCCCTGTTGAT 1140
Query 1588 GCAAACAATGTCTATGTAGATGACAGCTTAGTTGACTGGGCACGTCCCTTACTT-AACCG 1646
|||||||||||||||| ||||||||||| ||||| |||||||| || || ||| | |
Sbjct 1141 GCAAACAATGTCTATGCGGATGACAGCTTGGTTGATTGGGCACGACCATTGCTTGTA-CA 1199
Query 1647 AGCATC-TG-AGGAAGGAGATTTTGAGGGTTTGGCTGAT-TCAAAGATGGGTAACGAGTA 1703
|||| | || || ||| | | ||||| |||||||||||| | |||| || ||| |||||
Sbjct 1200 AGCA-CTTGAAGAAAGTA-ACTTTGAAGGTTTGGCTGATAT-AAAGCTGAATAATGAGTA 1256
Query 1704 TGACAGAGAGGAAATGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTTCGCCATTCAGC 1763
||| ||||| || ||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1257 TGATAGAGAAGAGATGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTCCGCTATACAGC 1316
Query 1764 TCGCCGCAGACCTCGCATG-AGCCAGATAGTACGCGC-CTTAGAAGGAAATGTATCGCTG 1821
|||||| |||||||||||| | |||| | || || | || ||||||||| |||||| |
Sbjct 1317 TCGCCGAAGACCTCGCATGGA-CCAGGTTGTGCGTGTGCT-AGAAGGAAACATATCGCCG 1374
Query 1822 TCTGATCTTAA-CGAAGGGATGAGACCAGGTCACAGCAA 1859
|| ||||| || | ||||||| | ||| |||||||||||
Sbjct 1375 TCAGATCTGAATC-AAGGGATAACACCCGGTCACAGCAA 1412
> AT3G24400.1 | Symbols: | pseudogene, protein kinase family,
contains Pfam PF00069: Protein kinase domain; blastp match of
72% identity and 1.7e-148 P-value to GP|13397640|emb|CAC34703.1||AX088876
unnamed protein product {Brassica napus} | chr3:8858484-8861822
REVERSE LENGTH=3339
Length=3339
Score = 135 bits (73), Expect = 1e-30
Identities = 79/82 (96%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 1400 AGGTTGCTGATTTTGGTCTTGCCAAGATTGCTTCTGATACAAACACTCATGTATCTACAC 1459
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2079 AGGTTGCTGATTTTGGTCTTGCCAAGATTGCTTCTGATACAAATACTCATGTATCTACAC 2138
Query 1460 GCGTGATGGGAACCTTTGGGTA 1481
| ||||||||||| ||||||||
Sbjct 2139 GTGTGATGGGAACTTTTGGGTA 2160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112850825160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5