BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479968
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24560.2 | Symbols: RSY3 | Adenine nucleotide alpha hydrolas... 2990 0.0
AT3G24570.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 148 2e-34
> AT3G24560.2 | Symbols: RSY3 | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr3:8963770-8966616 FORWARD
LENGTH=2123
Length=2123
Score = 2990 bits (1619), Expect = 0.0
Identities = 1981/2152 (92%), Gaps = 39/2152 (2%)
Strand=Plus/Plus
Query 1 GAGTTCGCTCGTTCGTAAATGGCGCGAGGTCTGTCTCTATGCTCCAATGGAAGAAAGTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGTTCGCTCGTTCGTAAATGGCGCGAGGTCTGTCTCTATGCTCCAATGGAAGAAAGTCT 60
Query 61 TCGACTTTACTCTCAATCTCCATCCCTAGGGTTTCATTTTCCTTTTCTCCGAAAACCCTT 120
|||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 61 TCGACTTTACTCTCAAACTCCATCCCTAGGGTTTCAATTTCCTTTTCTCCTAAAACCCTT 120
Query 121 TTCACGTCTTCATATCCACATCAATCTCGCCACCCAAAATTCT--C-ACGATTGTTCTGT 177
||||| | ||||||||||| |||||| |||||||||||||||| | |||||||||||||
Sbjct 121 TTCACTTGTTCATATCCACTTCAATCCCGCCACCCAAAATTCTCACAACGATTGTTCTGT 180
Query 178 AACCACGCATGTGTTCCC-GAGACGGTGGACGAAACGAAGTATAAAGAGCTTTTCAATAA 236
|| ||||| |||| |||| ||||| ||||||||||||| ||| || ||||||||||||||
Sbjct 181 AATCACGCCTGTG-TCCCGGAGACTGTGGACGAAACGAGGTACAAGGAGCTTTTCAATAA 239
Query 237 AAGAATGGCTATGGCAGGACTTAAACCTCACCACCGAATTGCTTTGGGAGTTTCAGGTGG 296
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 GAGAATGGATATGGCAGGACTTAAACCTCACAACCGAATTGCTTTGGGAGTTTCAGGTGG 299
Query 297 TCCTGATAGTATGGCTCTTTGTGTTCTAACTGCAAAATGGAAAACTGAAGGATTAAGTTG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCCTGATAGTATGGCTCTTTGTGTTCTAACTGCAAAATGGAAAACTGAAGGATTAAGTTG 359
Query 357 TGTCAATAAGTCAGATGGTTTCATTGATGGACTTGTCGCTATAGTTGTGGATCATGGATT 416
||| |||||| |||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 360 TGTTAATAAGACAGATGGTTTTATTGATGGACTTGTTGCTATAGTTGTTGATCATGGATT 419
Query 417 AAGACAAGAGAGTAAAGATGAAGCTGAACTTGTCTGTTCTAGAGTTTCTCAAATGGGTAT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 AAGACAAGAGAGTAAAGATGAAGCTGAACTTGTCTGTTCTAGAGTTTCTCAAATGGGAAT 479
Query 477 TAGATGTGAGATTGCAAGTTGTGATTGGGTTGATGGTAGACCAAAGCTTGGTCACTTGCA 536
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 CAGATGTGAGATTGCAAGTTGTGATTGGGTTGATGGTAGACCAAAGCTTGGCCACTTGCA 539
Query 537 AGAAGCAGCTCGTGAAATGAGGTATCAGATGATTTCGAATGTTTGTTTTCGACATCAGAT 596
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 540 AGAAGCAGCTCGTGAAATGAGGTATGAGATGATTTCGAATGTGTGTTTTCGACAACAGAT 599
Query 597 TGAGGTCTTACTTATAGCTCATCATGCCGATGACCAGGCTGAGTTATTCATTCTCAGGTT 656
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 TGAGGTCTTGCTTATAGCGCATCATGCAGATGACCAGGCTGAGTTATTCATTCTCAGGTT 659
Query 657 ATCTCGTAGTAGCGGTGTACTTGGTCTTGCAGGTACAGCTTTTGCTTCCGAGATTTTCTC 716
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 ATCTCGTAGTAGCGGTGTACTTGGTCTTGCGGGTACAGCTTTTGCTTCCGAGATTTTCTC 719
Query 717 CAGAAATCTGCAGTTAGATGCAAAACATATGAAGAACCGATCTATTCTCTTAGTGCGTCC 776
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 720 CAGAAATCTGCAGTTAGATGCAAAACATATGAAGAACCAATCTATTCGCTTAGTGCGTCC 779
Query 777 GCTATTAGAATTATGGAAAGAAGACATGTATAAGATATGTCAATGGGGTAGACAAGATTG 836
|||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 GCTACTAGATTTATGGAAAGAAGACATGTACAAGATATGTCAATGGGGTAGACAAGATTG 839
Query 837 GGTTGAAGATCCGACTAATCGTAGTCAATTGTTTGTCCGGAACAGGATTCGAACGTCAAT 896
|||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct 840 GGTTGAAGATCCAACTAATCGTAGTCAGTTGTTTGTTCGGAATAGGATTCGAACATCAAT 899
Query 897 AGGAAATCTACATTCAGGCAACTTCAAGTCAGAGCTTCATGCAGTCATTTCTGAATGCCG 956
|||||||||| | ||||| | ||||||||||||||| || |||||||||||||||||| |
Sbjct 900 AGGAAATCTAGAATCAGGTAGCTTCAAGTCAGAGCTGCAAGCAGTCATTTCTGAATGCAG 959
Query 957 AAGAACACGGTCATTTGTTGATAAAGTTTGTACAGACTTAATA-AGTCAGACCGTAACAG 1015
|||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 960 GAGAACACGTTCATTTGTTGATAAAGTTTGTACAGACTTAATACA-TCAGACCGTAACAG 1018
Query 1016 TGACAGATAAAGGGTATGCTATTCTTGATCTAGAGAGACTAAATCCTACAGAAGTTAAAG 1075
|||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 1019 TGACAGATAAAGGGTATGCTATTCTTGATCTAGAGAGACTTAATCCTTCAGGAGTTAAAG 1078
Query 1076 ACATTTGCCTCTCAAAGTATCTCGCTGCAGTCTTGCAGTTTATCTCTCAACGGCACAGAC 1135
||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||
Sbjct 1079 ACATTTGCCTCTCAAAGTATCTCTTTGCGGTCCTGCAGTTTATCTCTCAACGGCAAAGAC 1138
Query 1136 CAGTCAGAGGAAACACTTCAAAGTTGCTTTTGAACTATATCCGCGCAATTCCGTGCAGGA 1195
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CAATCAGAGGAAACACTTCAAAGTTGCTTTTGAACTATATCCGCGCAATTCCGTGCAGGA 1198
Query 1196 CATCTCTAACAGCTGCTGGTTGCTACCTTAGTCCCGCTCCTGGGTCCAAGGGTACCAAAA 1255
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 1199 CATCTCTAACAGCTGCTGGTTGCTACCTTAGTCCTGCTCCAGGGTCGAAGGGTACCAAAA 1258
Query 1256 TTATAGTTTCCTGTTCTGTTGACTGTCCTTTACCATCAAAGACAGAACTCTTGAACATTT 1315
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTATAGTCTCATGTTCTGTTGACTGTCCTTTACCATCAAAGACAGAACTCTTGAACATTT 1318
Query 1316 GCGTCAATGAAGCTCAGAAAAAACCGACTTCTGATGACCTCAGTA-AAATCATATCAGAC 1374
| |||||||| ||| | | | |||||||||| | | |||||||| |||||
Sbjct 1319 CCTTCAATGAAACTC--------C--A-T-CTGATGACCTTGG-ACAAATCATAGCAGAC 1365
Query 1375 GCAACATC-TATTTCAGACCATGAGGCCCCGAGCAAATTGTTTGAAGTCCATTTTTTGGT 1433
|||| ||| | |||| ||||||| ||| || | || |||||||||||||| ||| |||
Sbjct 1366 GCAAAATCGT-TTTCTGACCATGTGGCTCCAACCAGCTTGTTTGAAGTCCAGTTTCTGGA 1424
Query 1434 TGTTGCTTCTGAATCCGTTTTGAGTAAAGCCAGAGAGCTCAATCTTCTCAGCGAATCTAC 1493
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1425 TGTTGCATCTGAATCCGTATTGAGTAAAGCCAGAGAGCTCAATCTTCTCAGCGAATCGAC 1484
Query 1494 CTATACAACCATTGGTCTACTGCAAAGGAATGAAACCAATCGGTTCATAACTAAAACAGA 1553
||||||||||||||||||||||| ||| ||||||| || ||||| |||||||||||||
Sbjct 1485 GTATACAACCATTGGTCTACTGCAGAGGGATGAAACTAAACGGTTTTTAACTAAAACAGA 1544
Query 1554 TGACAAATCTGTAGATGAATCT-GAGCATGGAACCAACATTGCATCTTCCTCTGATAAAG 1612
|| ||||| || | |||| | ||||||||||||||||||||| |||||||||||||||
Sbjct 1545 AGAGAAATCAGT-G--GAAT-TAGAGCATGGAACCAACATTGCAGCTTCCTCTGATAAAG 1600
Query 1613 TACATCTTTGGCCAGGGCAAAATCTCTACTTCATGAACCGGTTTCTCATCAGATGGAACT 1672
|||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1601 TACATCTTTGTCTAGGGCAAAATCTCTACTTCATGAACCGTTTTCTCATCAGATGGAACC 1660
Query 1673 TGAGTGACCACCAATGTGATGAAGCTGGCTGCGGAAATTGTCCAGTGAGGACAGCTACAT 1732
| ||||||||||||||| ||||||| | |||| |||||||||||||||| || |||||||
Sbjct 1661 TAAGTGACCACCAATGTAATGAAGCAGACTGCAGAAATTGTCCAGTGAGTACTGCTACAT 1720
Query 1733 CAATGGAGGTTCGGCACATGGTTGAATCCGACTGGCTATATCTAGCTGAGCTTTCAAAAT 1792
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1721 CAATGGAGGTTCGGCACATGGTTGAACCCGACTGGTTATATCTAGCTGAGCTTTCAAAAT 1780
Query 1793 GCTCGAAC-TCAAACCATTCTATGTCATCCTCACAAAAAGCTCTCAGGTCCTTAAAGTTG 1851
|||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1781 GCTC-AACCTCAAATCATTCTATTTCATCCTCACAAAAAGCTCTCAGGTCCTTAAAGTTG 1839
Query 1852 ATCCCAGCTGCTGCAAGAAAAAGCCTCCCGGTCTTGATCAATCATTGCGGATTACTACTC 1911
|||||||| ||||||||||||||||| || |||||| ||||||| || ||||||||||||
Sbjct 1840 ATCCCAGCCGCTGCAAGAAAAAGCCTTCCTGTCTTGGTCAATCACTGTGGATTACTACTC 1899
Query 1912 AGTGTTCCCGCTATTGGCTTCAACTATTGTCCATGCCTTGAGACATCTGCAGTGTTTCTT 1971
| | || ||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 1900 TGCATACCAGCTATTGGCTTCAGTTATTGTTCATGCCTTGAGGCATCTGCAGTGTTTCTT 1959
Query 1972 CCAAGAGTACCACTCGGAGGTGGTCATAGCTCATTTCTCTAGTCTAGCCATATCCTGTTT 2031
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1960 CCAAGAATACCACTCGGAGGCGGTCATAGCTCATTTCTCTAGTCTAGCCATATCATGTTG 2019
Query 2032 CATTCATTCAATATTTCAATTCTAACAGACATTTATTCACTTGTACTGAATTCTTGTGAA 2091
||||||||||||| | | ||||||||||||||||||||||||||||||| |||||
Sbjct 2020 CATTCATTCAATA---C--T---AACAGACATTTATTCACTTGTACTGAATTCTCGTGAA 2071
Query 2092 ACAAAATAATATTTGAT-CAAGAATCTGTATCCTAGGCAACTTTCGTTATTG 2142
|| |||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 2072 ACGAAATAATATTTGATTCAAGAATCTGTATCCTAGGCAACTTCCGTTATTG 2123
> AT3G24570.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr3:8966521-8968657 REVERSE LENGTH=989
Length=989
Score = 148 bits (80), Expect = 2e-34
Identities = 91/96 (95%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 2048 CAATTCTAACAGACATTTATTCACTTGTACTGAATTCTTGTGAAACAAAATAATATTTGA 2107
|||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 989 CAATACTAACAGACATTTATTCACTTGTACTGAATTCTCGTGAAACGAAATAATATTTGA 930
Query 2108 T-CAAGAATCTGTATCCTAGGCAACTTTCGTTATTG 2142
| ||||||||||||||||||||||||| ||||||||
Sbjct 929 TTCAAGAATCTGTATCCTAGGCAACTTCCGTTATTG 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106224353220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5