BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479972
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24590.1 | Symbols: PLSP1 | plastidic type i signal peptidas... 1522 0.0
> AT3G24590.1 | Symbols: PLSP1 | plastidic type i signal peptidase
1 | chr3:8970672-8972168 FORWARD LENGTH=1046
Length=1046
Score = 1522 bits (824), Expect = 0.0
Identities = 971/1039 (93%), Gaps = 22/1039 (2%)
Strand=Plus/Plus
Query 1 AGTTGATGATGGTGATGATATCTCTTCATC-TCTCTACTCCGCCGCTAGCTTTTCTCAAA 59
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 18 AGTTGATGATGGTGATGATATCTCTTCA-CTTCTCTACTCCGCCGCTAGCTTTTCTCAAA 76
Query 60 TCTTCTTCCAATTCTAGATTTTC-CAACAACCCTAATCCTAATTTTGTCCAATTCACTCC 118
||| ||||||||| ||| |||| ||| |||||||||||||||||| |||||||||| ||
Sbjct 77 TCTGATTCCAATTCCAGA-TTTCTCAAGAACCCTAATCCTAATTTTATCCAATTCACCCC 135
Query 119 AAAATCCCAACTT-TTTTCTTGCCGTCGTTTCAATTTCAACACCGGAGTAACAAATTTAA 177
||||||||||||| ||||| || ||| |||||||||||||| | | |||||||||||
Sbjct 136 AAAATCCCAACTTCTTTTC-CCCCAACGTCTCAATTTCAACACC-G-G-AACAAATTTAA 191
Query 178 ACCGGAGAAGTCTGAGTTGCTATGGGGTTAAGGATTCAAGTGAGACAACGAAGTCTGCAC 237
||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 192 ACCGGCGAACTCTGAGTTGCTATGGGATTAAGGATTCAAGTGAGACAACGAAGTCTGCGC 251
Query 238 CGTCGTTAGACTCCGGCGGCGGCGGTGACGGCGGAGATAGTGGTGATGATGTTGAAGGTG 297
|||| ||||||| | ||||| ||||| |||||||||| |||||||||||| | ||||||
Sbjct 252 CGTCATTAGACT-C--CGGCGACGGTGGCGGCGGAGATGGTGGTGATGATGATAAAGGTG 308
Query 298 AAGTGGAGGaaaaaaaCAGGCTTTTTCCGGAATGGTTGGATTTTACATCGGATGATGCGA 357
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 309 AAGTGGAGGAAAAAAACAGACTTTTTCCGGAATGGTTGGATTTTACCTCGGATGATGC-A 367
Query 358 -AGACTGTGTTTGTGGCTATAGCTGTATCGTTGGCGTTTCGTTATTTTATTGCAGAACCA 416
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 368 CAGACTGTGTTTGTGGCTATAGCTGTATCGTTGGCGTTTCGTTATTTTATCGCAGAACCA 427
Query 417 AGATACATTCCTTCTTTGTCTATGTATCCTACTTTTGATGTTGGAGACAGATTAGTTGCA 476
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AGATATATTCCTTCTTTGTCTATGTATCCTACTTTTGATGTTGGAGACAGATTAGTTGCA 487
Query 477 GAGAAGGTGAGTTATTATTTTAGGAAGCCTTGTGCAAATGATATTGTGATCTTCAAAAGT 536
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 488 GAGAAGGTGAGTTATTATTTCAGGAAGCCTTGTGCAAATGATATTGTCATCTTTAAAAGT 547
Query 537 CCACCAGTTCTTCAGGAAGTTGGGTATACTGATGCGGATGTATTTATTAAACGGATTGTT 596
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 548 CCACCAGTTCTTCAGGAAGTTGGGTATACTGATGCCGATGTATTTATTAAACGGATTGTT 607
Query 597 GCGAAAGAAGGTGACCTTGTGGAGGTACATAATGGGAAACTGATGGTTAATGGTGTTGCT 656
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GCCAAAGAAGGTGACCTTGTGGAGGTACATAATGGGAAACTGATGGTTAATGGTGTTGCT 667
Query 657 AGGAATGAAAAATTCATCTTAGAGCCTCCTGGATATGAAATGACACCATTTAGGGTTCCG 716
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 668 AGGAATGAAAAATTCATCTTAGAGCCTCCTGGTTATGAAATGACACCAATTAGGGTACCG 727
Query 717 GAAAATTCAGTATTTGTGATGGGTGACAACCGGAATAACAGTTATGATTCACACGTGTGG 776
||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 728 GAAAATTCAGTCTTTGTGATGGGTGATAACCGGAATAACAGTTATGATTCGCACGTATGG 787
Query 777 GGTCCTCTGCCTTTGAAGAATATTATTGGACGGTCAGTTTTTCGGTATTGGCCACCAAAC 836
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 788 GGTCCTCTGCCTTTGAAGAATATTATTGGACGGTCGGTTTTTCGGTATTGGCCACCAAAC 847
Query 837 AGAGTAAGCGGGACAGTGCTAGAAGGTGGCTGTGCAGTGGATAAGCAATAGAACATATTG 896
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 848 AGAGTAAGCGGGACAGTGCTAGAAGGTGGCTGTGCTGTGGATAAGCAATAGAACATATTG 907
Query 897 GAACGTTTTGATTC----T-TCCT--TTT-AAACACTTGTGCAGATAAAAATGAAAACAA 948
||||||||||||| | || | ||| ||||||||||||||||||||| ||||||||
Sbjct 908 TAACGTTTTGATTCGGCATGTCTTCATTTGAAACACTTGTGCAGATAAAAACGAAAACAA 967
Query 949 TGTACCTTTCTATGAAGGAGAGAGTTGCACATTTGAATTGGACTGCAGATTAATGAGAAA 1008
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 968 TGTACCTTTTTATGAAGGAGAGAGTTGCACATTTGAATTAGATTGCAGATTAATGAGGAA 1027
Query 1009 ACAAGAAATTCTTATTTGC 1027
|||||||||||||||||||
Sbjct 1028 ACAAGAAATTCTTATTTGC 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50334615294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5