BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479980
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24690.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 680 0.0
> AT3G24690.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: glycine-rich protein (TAIR:AT1G27090.1); Has 51 Blast
hits to 50 proteins in 15 species: Archae - 0; Bacteria -
2; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). | chr3:9020651-9021491
FORWARD LENGTH=765
Length=765
Score = 680 bits (368), Expect = 0.0
Identities = 480/530 (91%), Gaps = 23/530 (4%)
Strand=Plus/Plus
Query 1 TTTCTTGTTCTCTTGCTCCGCCGTGGTTATCTTTCTCAGACGTTCTCATCGCTCATAC-T 59
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 23 TTTCTTGTTCTCTTTCTCCGCCGTGGTTATCTATCTCAGACGTTCTCATCGCTCAT-CTT 81
Query 60 GATACCATGGCCGCCGTAGAAGGACCAATCTTGGCTCTCATCAGCAAACGTCTCCGTACT 119
|| | |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 82 GACATCATGGCCGCCGTAGAAGGACAAATCTCGGCTCTCATCAGCAAACGTCTCCGTACT 141
Query 120 CTCCGCAAGAAATACAACCGTATTACTGACATGGAAGAGTCGATTTCTCAGGGAAAAACA 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 142 CTCCGCAAGAAATACAACCGTATAACTGACATGGAAGAGTCGATTTCTCAGGGGAAAACA 201
Query 180 CTAAACAAGGAACAAGAAGAAACCCTCCGTTCAAAGCCAATCGTCACCGCCCTTATCGAT 239
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 202 CTAAACAAGGAACAAGAAGACACCCTCCGTTCAAAGCCAATCGTCTCCGCCCTTATCGAT 261
Query 240 GAGCTCATAAATCTCCGCATCCCTCCTCCTTC--C-G---TGGCAGAAGAGATCAATCTC 293
|||||| |||| |||||||| ||||||||||| | | | ||||||||| || | |
Sbjct 262 GAGCTCGTAAAGCTCCGCATTCCTCCTCCTTCTGCAGCCATTTCAGAAGAGACCAGCCCC 321
Query 294 CCTGCTAAGGACAAGAAAAAGCAAAAG---------GCACGTAAGGAGGTGGCTGAGGAG 344
||||||||| |||||||| |||||||| |||||||||||||| |||||||||
Sbjct 322 CCTGCTAAGAACAAGAAACAGCAAAAGTTATCCCACGCACGTAAGGAGGTAGCTGAGGAG 381
Query 345 GAAAACGTAACGGCCAAGACAGATATCGAGGATTGCAAGATCTCTGATG--G-TCTCAAT 401
|||||||| |||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 382 GAAAACGTGACGGCCAAGACAGATATCGAGGATTGCAAGATCTCTGATGATGGTATCAAT 441
Query 402 TCTGATGAGGTTTCCAAGGACGACACTTCTCCTAGTAGCGAAAGCTCAGAAGGTGTTACG 461
||||| | | ||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 442 TCTGA-G-G-TTTCCAAGGACGATACTTCTCCTAGTAGCGAAAGCTCACAAGGTGTTACG 498
Query 462 CCATCGCCCCTTAGCAGAAAGGCACGACGTAAACGGAACGCGAAGAAACC 511
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CCATCGCCGCTTAGCAGAAAGGCACGACGTAAACGGAACGCGAAGAAACC 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5