BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479980 Length=693 Score E Sequences producing significant alignments: (Bits) Value AT3G24690.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 680 0.0 > AT3G24690.1 | Symbols: | BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G27090.1); Has 51 Blast hits to 50 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:9020651-9021491 FORWARD LENGTH=765 Length=765 Score = 680 bits (368), Expect = 0.0 Identities = 480/530 (91%), Gaps = 23/530 (4%) Strand=Plus/Plus Query 1 TTTCTTGTTCTCTTGCTCCGCCGTGGTTATCTTTCTCAGACGTTCTCATCGCTCATAC-T 59 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | | Sbjct 23 TTTCTTGTTCTCTTTCTCCGCCGTGGTTATCTATCTCAGACGTTCTCATCGCTCAT-CTT 81 Query 60 GATACCATGGCCGCCGTAGAAGGACCAATCTTGGCTCTCATCAGCAAACGTCTCCGTACT 119 || | |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 82 GACATCATGGCCGCCGTAGAAGGACAAATCTCGGCTCTCATCAGCAAACGTCTCCGTACT 141 Query 120 CTCCGCAAGAAATACAACCGTATTACTGACATGGAAGAGTCGATTTCTCAGGGAAAAACA 179 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 142 CTCCGCAAGAAATACAACCGTATAACTGACATGGAAGAGTCGATTTCTCAGGGGAAAACA 201 Query 180 CTAAACAAGGAACAAGAAGAAACCCTCCGTTCAAAGCCAATCGTCACCGCCCTTATCGAT 239 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 202 CTAAACAAGGAACAAGAAGACACCCTCCGTTCAAAGCCAATCGTCTCCGCCCTTATCGAT 261 Query 240 GAGCTCATAAATCTCCGCATCCCTCCTCCTTC--C-G---TGGCAGAAGAGATCAATCTC 293 |||||| |||| |||||||| ||||||||||| | | | ||||||||| || | | Sbjct 262 GAGCTCGTAAAGCTCCGCATTCCTCCTCCTTCTGCAGCCATTTCAGAAGAGACCAGCCCC 321 Query 294 CCTGCTAAGGACAAGAAAAAGCAAAAG---------GCACGTAAGGAGGTGGCTGAGGAG 344 ||||||||| |||||||| |||||||| |||||||||||||| ||||||||| Sbjct 322 CCTGCTAAGAACAAGAAACAGCAAAAGTTATCCCACGCACGTAAGGAGGTAGCTGAGGAG 381 Query 345 GAAAACGTAACGGCCAAGACAGATATCGAGGATTGCAAGATCTCTGATG--G-TCTCAAT 401 |||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 382 GAAAACGTGACGGCCAAGACAGATATCGAGGATTGCAAGATCTCTGATGATGGTATCAAT 441 Query 402 TCTGATGAGGTTTCCAAGGACGACACTTCTCCTAGTAGCGAAAGCTCAGAAGGTGTTACG 461 ||||| | | ||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 442 TCTGA-G-G-TTTCCAAGGACGATACTTCTCCTAGTAGCGAAAGCTCACAAGGTGTTACG 498 Query 462 CCATCGCCCCTTAGCAGAAAGGCACGACGTAAACGGAACGCGAAGAAACC 511 |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 499 CCATCGCCGCTTAGCAGAAAGGCACGACGTAAACGGAACGCGAAGAAACC 548 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33556410196 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5