BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479983
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58850.1 | Symbols: ATMYB119, MYB119 | myb domain protein 11... 1951 0.0
AT5G11050.1 | Symbols: MYB64, AtMYB64 | myb domain protein 64 |... 654 0.0
> AT5G58850.1 | Symbols: ATMYB119, MYB119 | myb domain protein
119 | chr5:23763945-23765441 FORWARD LENGTH=1293
Length=1293
Score = 1951 bits (1056), Expect = 0.0
Identities = 1216/1293 (94%), Gaps = 12/1293 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGACCGGCGCCTTGTCCATGGAGCTGTGCCGCCGTTGACAGCCGTTGAGAGATTC 60
||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1 ATGGAAGACCGACGCCTTGTCCATGGAGCTGCGCCGCCGTTGACAGCCGTGGAGAGATTC 60
Query 61 TTATACGGTCAAAAGAACGATGTCTTGTGTTCCAAGAAAAAAGAGTGTTCTAGAGACCGA 120
||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||| |
Sbjct 61 TTATACGGTCAAAAGAATGATGCCTTGTGTTCCAAGAAACAAGAGAGTTCTAGAGACCAA 120
Query 121 CCGATCGTGAAGACGAAAATGTCGATTGAGACTAGAAGCGACAACAAAGAGAACACAACG 180
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGATCGTGAAGACAAAAATATCGATTGAGACTAGAAGCGACAACAAAGAGAACACAACG 180
Query 181 TTTGGGCCGACGAGGGAGAAACATTTGGTCCTTAATGGCGGCAACAGAAGCCCTATTGGA 240
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 181 TTTGGGCCGACGAGGGAGAAACACTTGGTCCTTAATGGCGGCAACAGAAACCCTACTGGA 240
Query 241 GAACTGGTCGCTAGAAGTGCAGCCAGAGATTATCAAAACAGTCCGAAGAAACGATCTTAC 300
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 241 GAAGTGGTCGCTAGAAGTGCAGCCAGAGATTATCAAAACAGTACGAAGAAACGATCATCC 300
Query 301 AAGAACCTCATCAAAGGGCAATGGACGGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAACCTCATCAAAGGGCAATGGACGGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTG 360
Query 361 AGGCAACATGGGGAGAGGAAATGGGCACTGATATCGGAGAAACTTGAGGGAAGAGCAGGC 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 AGGCAACATGGGGAGAGGAAATGGGCAATGATATCGGAGAAACTTGAGGGAAGAGCAGGC 420
Query 421 AAACAATGTCGTGAGAGATGGCATAATCATCTCCGTCCTAATATTAAGAAAGATGGATGG 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 AAACAATGTCGTGAGAGATGGCATAATCATCTCCGTCCTGATATTAAGAAAGATGGATGG 480
Query 481 AGTGAAGAAGAAGAGAAGGTTCTTGTGGAATCGCACATGAGAATCGGGAACAAATGGGCA 540
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 AGTGAAGAAGAAGAGAGGGTTCTTGTGGAATCACACATGAGAATCGGGAACAAATGGGCA 540
Query 541 GAGATAGCTAAACTCATACCAGGACGGACTGAGAATTCTATCAAGAACCATTGGAATGCG 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGATCGCTAAACTCATACCAGGACGGACTGAGAATTCTATCAAGAACCATTGGAATGCG 600
Query 601 ACCAAGCGACGTCAAAATTCAAAACGCAAACACAAACGCGAATCAAACGCTGATAACAAT 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACCAAGAGACGTCAAAATTCAAAACGCAAACACAAACGCGAATCAAACGCTGATAACAAT 660
Query 661 GATACCGATGTCTCTCCATCAGCTAAAAGGCCATGCATTCTCCAAGACTACATCAAAAGC 720
|||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 661 GATAGAGATGCCTCTCCATCAGCTAAAAGACCATGCATTCTCCAAGACTACATCAAAAGT 720
Query 721 ATCGGGAGTAATGACATTAACAAGAACAATGACGAGAA------------CACCATCAGT 768
|||| ||| ||| ||||||||||| ||||||||||||| ||||||||||
Sbjct 721 ATCGAGAGAAATAACATTAACAAGGACAATGACGAGAAGAAGAATGAGAACACCATCAGT 780
Query 769 GTTCTTTCTACACCTAATCTCGATCAGATCTATTCTGATGGAGATTCCGCATCGTCCATG 828
||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 781 GTTATTTCTACACCTAATCTTGATCAGATCTATTCTGATGGTGATTCCGCGTCGTCCATC 840
Query 829 CTTGGCGATCCATATGACGAAGAGCTGGTTTACCTTCAAAATATCTTTGCAAACCATCCG 888
||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 841 CTTGGCGGTCCATATGACGAAGAGCTAGATTACTTTCAAAATATCTTTGCAAACCATCCG 900
Query 889 ATTTCTCTTGAGAATATAGGTTTGAGCCAAACTTCCGATGAGGTAACTCAGTCTTCAGCA 948
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 901 ATTTCTCTTGAGAATTTAGGTTTGAGCCAAACTTCGGATGAGGTAACTCAGTCTTCATCA 960
Query 949 ACTGGTTTCATGACCAAGAACCCTAAACCTAACTTGCACAACAACGTTGGAACTCATCAT 1008
|||| ||||||| |||||||||||| |||||||||||| ||| ||||||| |||||||
Sbjct 961 TCTGGGTTCATGATCAAGAACCCTAACCCTAACTTGCACGACAGTGTTGGAATTCATCAT 1020
Query 1009 CAAGAGGCAGCGATCACAGCTCCGGCGAATACACCCCACCTTGCGTCTGATATATACTTA 1068
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 CAAGAGGCAACGATCACAGCTCCGGCGAATACACCCCACCTTGCGTCTGATATCTACTTA 1080
Query 1069 TCTTATTTGTTGAATGGGACGACGCCGTCCTACTCCGACACTCATTTTCCGTCTTCCTCA 1128
|||||||| ||||| || |||||| | || ||||||||||||||||||||||||||||||
Sbjct 1081 TCTTATTTATTGAACGGTACGACGTCTTCATACTCCGACACTCATTTTCCGTCTTCCTCA 1140
Query 1129 TCTTCCACGTCATCCACCACCGTAGAGCACGGAGGCCGCAACGAGTTTCTTGAGCCTCAA 1188
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1141 TCTTCCACGTCATCCACCACCGTAGAGCATGGAGGCCACAACGAGTTTCTTGAGCCTCAA 1200
Query 1189 GCTAACTCTACAAGTGAAAGAAGAGAAATGGATCTGATAGAGATGCTCTCTGGTTCTATT 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCTAACTCTACAAGTGAAAGAAGAGAAATGGATCTGATAGAGATGCTCTCTGGTTCTATT 1260
Query 1249 CAAGGTAGCAATATCTGCTTCCCATTGTTCTAG 1281
||||||||||| ||||||||||| ||| |||||
Sbjct 1261 CAAGGTAGCAACATCTGCTTCCCGTTGGTCTAG 1293
> AT5G11050.1 | Symbols: MYB64, AtMYB64 | myb domain protein 64
| chr5:3502092-3503834 FORWARD LENGTH=1523
Length=1523
Score = 654 bits (354), Expect = 0.0
Identities = 997/1290 (77%), Gaps = 114/1290 (9%)
Strand=Plus/Plus
Query 37 CCGTTGACAGCCGTTGAGAGATTCTT-ATACGGTCAAAAGAACGATGTCTTGTG-TTCCA 94
|||||||| || |||||||||||||| | |||| ||||||||||| | |||||| || ||
Sbjct 104 CCGTTGACGGCGGTTGAGAGATTCTTGA-ACGGCCAAAAGAACGAAGCCTTGTGCTT-CA 161
Query 95 AGAAAAAAGAGTGTTCTAGAGACCGACCGATCGTGAAGACGAAAATGTCGATTGAGACTA 154
||||| |||| |||||| ||||||||||||||||||||||| || | ||||||||| ||
Sbjct 162 AGAAACAAGAACGTTCTATAGACCGACCGATCGTGAAGACGACAAGGGCGATTGAGATTA 221
Query 155 GAAGCGACAACAAAGAGAACACAACGTTTGGGCCGACGAGGGAGAAACATTTGGTCCTTA 214
||| || ||||||||||||| | |||||| |||| || ||||||| | | |
Sbjct 222 GAAATGAAAACAAAGAGAACATGATGTTTGGTCCGAGGAAGGAGAAA-A------AC-T- 272
Query 215 ATGGCGGCAACAGAAGCCCTATTGGAGAACTGGTCGCTAGAA-GTGCAGCCAGAGA-T-T 271
| ||| | | |||||||||| | |||| || || ||||||| | ||| | |
Sbjct 273 -T---GGC--C----G--TTATTGGAGAAATCGTCGTTA-AAGGTGCAGCTAAAGATTAT 319
Query 272 A--T-CAA-AACAGT-CCGAAGAAACGATCTTACAAGAACCTCATCAAAGGGCAATGGAC 326
| | ||| | | | | ||||| | | | |||||||| |||||||||||||||||||
Sbjct 320 ACTTGCAAGGATA-TAACAAAGAAGCAACCATACAAGAATATCATCAAAGGGCAATGGAC 378
Query 327 GGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTGAGGCAACATGGGGAGAGGAAATGGGC 386
|| || ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 379 AGCCGATGAAGACAGGAAGTTGATAAAGTTGGTGATGCAACATGGAGAGAGGAAATGGGC 438
Query 387 ACTGATATCGGAGAAACTTGAGGGAAGAGCAGGCAAACAATGTCGTGAGAGATGGCATAA 446
| | || |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 439 AGTAATCTCGGAGAAGCTTGAGGGAAGAGCAGGCAAGCAATGTCGTGAGAGATGGCATAA 498
Query 447 TCATCTCCGTCCTAATATTAAGAAAGATGGATGGAGTGAAGAAGAAGAGA-AGGTTCTTG 505
||||||||||||| |||| ||||||||| | ||||||||||||||||||| | ||||||
Sbjct 499 TCATCTCCGTCCTGATATCAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGAC-TTCTTG 557
Query 506 TGGAATCGCACATGAGAATCGGGAACAAATGGGCAGAGATAGCTAAACTCATACCAGGAC 565
||||| | |||| ||||||||||| || ||||||||||| ||||||||||||| ||| |
Sbjct 558 TGGAAGCACACACCAGAATCGGGAATAAGTGGGCAGAGATCGCTAAACTCATACAAGGGC 617
Query 566 GGACTGAGAATTCTATCAAGAACCATTGGAATGCGACCAAGCGACGTCAAAATTCAAAAC 625
| || || || || ||||||||||||||||||||||| || ||||| ||||| |||||||
Sbjct 618 GAACCGAAAACTCGATCAAGAACCATTGGAATGCGACAAAACGACGCCAAAACTCAAAAC 677
Query 626 GCAAACACAAACG--CGAATCAAACGCTGATA--A-CAATGATACCGATG-TCTCTC-C- 677
||||||| || || | || |||||| |||| | || |||| |||| |||||| |
Sbjct 678 GCAAACATAAGCGTTCAAA--AAACGCGGATAGTAACAGCGATATTGATGATCTCTCTCC 735
Query 678 ATCAGCTAAAAGGCCATGCATTCTCCAAGACTACATCAAAAGCATCGGGAGTAATGACAT 737
||| ||||||||||| |||||||| ||||||| || |||| ||||| || ||||||||
Sbjct 736 ATCCGCTAAAAGGCCGCGCATTCTCGAAGACTATATTAAAAACATCGAGAATAATGACAA 795
Query 738 TAACAA-G---A-A-CA--ATGACGAGAACACC-ATCAGTGTTCTTTCTACACCTAATC- 787
||||| | | | || ||||| | | | || ||||||||| || | |||
Sbjct 796 GAACAATGGCGAGAACATCATGACTACTAGTGGTAACAATGTTCTTTCGACTTCGAATTA 855
Query 788 TCGATCAGATCTATTCTGATGGAGATTCCGCATCGTC-CATGCTTGGC-GATCCATATGA 845
| |||||| || ||||||| ||| || ||||||| | | ||||| ||||| |||||
Sbjct 856 T-GATCAGTTCAATTCTGA---AGACTCTACATCGTCAC-T-CTTGGATGATCCTTATGA 909
Query 846 CGAAGAGCTGGTTTACCTTCAAAATATCTTTGCA-AACCATCCGATTTCTCTTGAGAATA 904
||||||||| |||| ||| |||||||||||| | |||||| || ||| ||||| |
Sbjct 910 CGAAGAGCTTGTTTTCCTGAAAAATATCTTTG-AGAACCATTCG----CTC--GAGAACA 962
Query 905 T-AGGTTTGAGCCAAACTTCCGATGAGGTAACTCAGTCTTCAGCAACTGG-TTTCATGAC 962
| | |||||||||| | | || || |||| |||||||| || |||| ||| ||||
Sbjct 963 TCAA-TTTGAGCCAAGGTACGGA-GA--TAACCCAGTCTTCTTCATCTGGGTTT-ATGAT 1017
Query 963 CAAGAACCCTAAACCTAA-C-T---T-GCACAACAA--CGTT-GGAACTCATCATCAAGA 1013
| |||||||||||||||| | | | | ||||||| | || ||||| |||| | ||
Sbjct 1018 CGAGAACCCTAAACCTAAACCTAACTTGTACAACAATACTTTTGGAACACATCTTG--GA 1075
Query 1014 GGCAGCGATCACAGCTCCGGCGAATACACCCCACCTTGCGTCTGATATATACTTATCTTA 1073
| || | |||||| || || ||| | ||||||| || |||||||| ||||||||| |
Sbjct 1076 G-CAATGGTCACAGAACCTGCCAATTCTTCCCACCTCGCATCTGATATCTACTTATCTGA 1134
Query 1074 TTTGTTGAATGGGACGACGCCGTCCTACTCCGACACTCA-TTTTCCGTCTTCCTCATCTT 1132
||||||||| || ||| || |||| | || | |||| | ||||| ||||||| | |
Sbjct 1135 TTTGTTGAACGGTACGGCGTCGTCTT-CTTCTTCACTTACTTTTCTGTCTTCCA-A-C-- 1189
Query 1133 CCACGTCATCCACCACCGTAGAGCACGGAGGCCGCAA-CGAGTTTCTTGAGCCTCAAGCT 1191
| | | | | | ||||| | || | || |||||| ||| ||| ||||||
Sbjct 1190 --A----A-C-A--A---T-GAGCATGCCGGT-GAAAACGAGTTGCTTTTGCCCCAAGCT 1234
Query 1192 AACTCTACAAGTGAAAGAAGAGAAATGGATCTGATAGAGATGCTCTCTGGTTCTATTCAA 1251
||||| || || |||||||||||||||||||||||||| ||| | |||||||||| ||||
Sbjct 1235 AACTCCACTAGCGAAAGAAGAGAAATGGATCTGATAGAAATGTTGTCTGGTTCTACTCAA 1294
Query 1252 GGTAGCAATATCTGCTTCCCATTGTTCTAG 1281
|||||||| || || |||||||||||||||
Sbjct 1295 GGTAGCAACATTTGGTTCCCATTGTTCTAG 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5