BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479989
Length=2244
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58950.1 | Symbols: | Protein kinase superfamily protein | ... 3149 0.0
AT3G46930.1 | Symbols: | Protein kinase superfamily protein | ... 555 9e-157
> AT5G58950.1 | Symbols: | Protein kinase superfamily protein
| chr5:23800928-23803673 REVERSE LENGTH=2310
Length=2310
Score = 3149 bits (1705), Expect = 0.0
Identities = 2123/2311 (92%), Gaps = 83/2311 (4%)
Strand=Plus/Plus
Query 1 TCTAAAAAGGCGTAAGAGGTCTGGATTCGTCAAAAAGGTCTTTGAGAATCCAAAAACGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTAAAAAGGCGTAAGAGGTCTGGATTCGTCAAAAAGGTCTTTGAGAATCCAAAAACGTC 60
Query 61 TTATGGTTTAGCTCTC-GATTT-T-C-TC-ATTCGA--TTCCT---TCTTC----CTCCG 106
|||||||||||||||| |||| | | || |||| | ||||| |||| | |||
Sbjct 61 TTATGGTTTAGCTCTCAAATTTCTCCTTCGATTCCATCTTCCTCCGGCTTCAAGTCGCCG 120
Query 107 G--CTTC---AAGT-CG---C-C--GG--ATCTTCTTGAT-TTCCGATT--CACTTGGAC 149
| |||| | | || | | || || |||| | |||| || ||| |||
Sbjct 121 GATCTTCTTGATTTCCGATTCACTTGGCTTTCCTCTT-CTCTTCCTTTTAACAC-ACGAC 178
Query 150 GACGCTTCATAGTTTTTTGTTGTGATTCCGGAAGAGGCATGTAATTCAGGA-TTTCCGGC 208
|||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||
Sbjct 179 GACGCTTCATAGTTTTTTGTTGTGATTCAGGAAGAGGTATGTAATTCAGGATTTTCCGGT 238
Query 209 GA-TTTGGTGGG-ACGTTTGGAGAAATTTCGAG-TTTTTAGTATTCGTAGGAAAGTTTTC 265
|| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 239 GATTTTGGTGGGAACGTTTGGAGAAATTTCGAGCTTAGTAGTATTCGTAGGAAAGTTTTC 298
Query 266 TTCttttttttttGGGTTTGTAGATGTTGTTGATTAATGGTTGAAGGTGAGAAATGGGGC 325
||| |||| | | ||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 299 TTC----TTTTAT-GATTTGTAGTTTTTGTGGATTAATGGTTGAAGGTGAGAAATGGGGC 353
Query 326 TTCGATGGTTTTGAAGAGATTGTGTAT-TATCGTGGAAATGAGATTGTTGGAGATTGCAG 384
|||||||| |||||| ||||| ||||| | ||||||||||||||| ||||||||||||||
Sbjct 354 TTCGATGGATTTGAAAAGATTTTGTATCT-TCGTGGAAATGAGATCGTTGGAGATTGCAG 412
Query 385 AAAGTCATCTGATTCGTATTCACGGGTTTGCTTAGGGACTTTGGAGAAACTGAGAGTTTT 444
||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 413 CAAGTCATCTCATTCGTATTCACGGGTTTGCTTAGGTACTTTGGAGATATTGAGAGTTTT 472
Query 445 GGTTGTTTAGTCTTTGA-GAAAAGGTTTG-TGAGTTTGTTTTTCGAGCTTAGAGATGGAT 502
||||||||||||||||| |||||| ||| | |||||| |||||||||||||||||||||
Sbjct 473 GGTTGTTTAGTCTTTGATAAAAAGG-TTGTTTAGTTTG-TTTTCGAGCTTAGAGATGGAT 530
Query 503 GAAGAGGCTACTTCTTGGATTAGGAGGGCTAAGTTTTCTCAAACGGTTTCTTATCGTTTG 562
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GAAGAGGCTACTTCGTGGATTAGGAGGGCTAAGTTTTCTCAAACGGTTTCTTATCGTTTG 590
Query 563 AATTCGTCAAAGTTGGCTTCTCTCCCTTTTATGGTAAACCAAGATAAGATTGCTGGATTG 622
||||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||||
Sbjct 591 AATTCTTCAAAGTTAGCTTCTCTTCCTTTTATGATAAACCAAGATAAGTTTTCTGGATT- 649
Query 623 AGAA-CTATACCCCAGAGATCATCATCTTCGTCGTCGGCATCATCATCGGATCCCAAGTT 681
| || ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 650 AAAAGCTATACCTCAGAGATCATCTTCTTCGTCGTCGGCATCATCATCGGATCCTAAGTT 709
Query 682 GGTTTCTAGTAACTCACAGACTACGGAAGATACCTCGAGTTTGGAA---GCTGATGTATA 738
|||||| ||||||||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 710 GGTTTCGAGTAACTCACAGACTACGGGAGATACTTCGAGTTTGGAAGCTGCTGATGTATA 769
Query 739 TGTTGTTGATTCGGAAATACAGACAAACCCTGTAACTAATAAGCAGAGATCTGTTTCTCC 798
|||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 770 TGTTGTTGATTCGGAAATACAGACAAACCCGGTTACTCATAAGCAGAGATCTGTTTCTCC 829
Query 799 CTCGCCTCAAATGGCTGTTCCTGATGTGTTTAAGGAAGCAAGGTCGGAGCGTAAGAGATT 858
|||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 830 TTCGCCTCAGATGGCTGTTCCCGATGTGTTTAAGGAAGCGAGGTCTGAGCGTAAGAGATT 889
Query 859 TTCTACTCCACATCCGAGACGGGTGGAATCGGAAAAGGGAATGAAGCCTAAGTTATCTCA 918
||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 890 TTCTACTCCACATCCAAGAAGAGTGGAATCGGAAAAGGGAATGAAGCCTAAGTTATCTCA 949
Query 919 TAAAAACTCCTTTGAAAAGAGATCATTTAATTTGCGGTCTCCATCAGGTCCTATCAGAGA 978
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 950 TAAAAACTCCTTTGACAAGAGATCATTTAACTTGCGGTCTCCTTCAGGTCCTATCAGAGA 1009
Query 979 TCTTGGCACTCTGAGAATTCAAGAGAGGGTGAAGAGCAAGAAGGACACAGGATGGTCTAA 1038
|||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1010 TCTTGGCACTTTGAGAATTCAAGAGAGGGTCAAGAGCAAGAAGGACACTGGATGGTCTAA 1069
Query 1039 GCTTTTTGATAATACTGGTCGTAGAGTGAGTGCTGTAGAAGCTTCTGAAGAGTTCCGTGT 1098
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1070 GCTTTTTGATAATACTGGTCGTAGAGTGAGTGCTGTGGAAGCTTCTGAAGAGTTCCGTGT 1129
Query 1099 TGATATGTCAAAGTTGTTCTTTGGGCTTAAGTTTGCTCATGGGTTATATAGCCGGCTATA 1158
||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1130 TGATATGTCAAAGCTGTTCTTTGGGCTTAAGTTTGCTCATGGTTTATACAGCCGGCTATA 1189
Query 1159 CCATGGTAAGTATGAAGATAAAGCTGTTGCCGTGAAGCTTATCACTGTACCTGATGATGA 1218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TCATGGTAAGTATGAAGATAAAGCTGTTGCCGTGAAGCTTATCACTGTACCTGATGATGA 1249
Query 1219 CGATAATGGATGCTTGGGAGCTCGTTTAGAGAAACAGTTTACCAAGGAAGTCACCCTTTT 1278
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1250 CGATAATGGATGCTTGGGAGCTCGTTTAGAGAAACAGTTTACCAAGGAAGTGACCCTTTT 1309
Query 1279 GTCTCGATTGACCCATCCAAATGTTATAAAG---GT-G-ATT-T-CT----TCT-C-TCT 1325
||||||||||||||||||||||||||||||| || | | | | || | | |
Sbjct 1310 GTCTCGATTGACCCATCCAAATGTTATAAAGTTTGTTGGAGCGTACAAAGATCCGCCTGT 1369
Query 1326 CT-TTGTGGG---A-GC--T-TTTACCTGAAGGATCGTTAAGATCTTTTCTGCACAAGCC 1377
| ||||| | || | ||||||||||||||| |||||||||||||||||||||||
Sbjct 1370 ATATTGTGTCCTCACGCAGTATTTACCTGAAGGATCTTTAAGATCTTTTCTGCACAAGCC 1429
Query 1378 TGAGAATAGGTCTCTTCCTTTGAAAAAGCTTATAGAGTTTGCTCTAGATATTGCAAGAGG 1437
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1430 TGAGAATAGGTCTCTTCCTTTGAAAAAGCTTATAGAGTTTGCTATAGATATTGCTAGAGG 1489
Query 1438 AATGGAATATATTCACTCACGACGCATAATTCATCGGGATCTTAAGCCGGAAAATGTATT 1497
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1490 GATGGAATATATTCACTCACGACGCATAATTCATCGGGATCTTAAGCCAGAAAATGTATT 1549
Query 1498 GATCGACGAAGACTTCCATTTGAAGATCGCTGACTTTGGCATAGCGTGCGAGGAGGAGTA 1557
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 GATCGACGAAGAATTCCATTTGAAGATCGCTGACTTTGGCATAGCGTGCGAGGAGGAGTA 1609
Query 1558 CTGTGACATGTTGGCTGATGACCCCGGAACATATCGGTGGATGGCACCTGAAATGATAAA 1617
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1610 CTGTGACATGTTGGCTGATGACCCCGGAACATATAGGTGGATGGCACCTGAAATGATAAA 1669
Query 1618 ACGGAAACCACACGGGCGTAAGGCCGATGTTTACAGCTTTGGACTCGTTTTATGGGAAAT 1677
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1670 ACGGAAACCACATGGACGTAAGGCCGATGTATACAGCTTTGGACTCGTTTTATGGGAAAT 1729
Query 1678 GGTAGCTGGGGCAATCCCGTATGAGGACATGAATCCTATTCAAGCTGCTTTCGCAGTCGT 1737
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 GGTAGCTGGAGCAATCCCATATGAGGACATGAATCCTATTCAAGCTGCTTTCGCAGTCGT 1789
Query 1738 ACACAAGAACATTAGGCCAGCTATTCCGGGAGATTGTCCAGTAGCCATGAAAGCTCTGAT 1797
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1790 ACATAAGAACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGAAAGCTCTGAT 1849
Query 1798 AGAGCAGTGTTGGTCGGTTGCACCGGATAAGAGACCAGAGTTCTGGCAGATAGTGAAAGT 1857
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1850 AGAGCAGTGTTGGTCGGTTGCACCAGATAAGAGACCCGAGTTCTGGCAGATAGTGAAAGT 1909
Query 1858 GCTTGAACAGTTTGCGATTTCACTGGAACGTGAAGGGAACCTGAATCTGTCTTCGCA-CA 1916
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 1910 GCTTGAACAGTTTGCGATATCACTGGAACGTGAAGGGAACCTGAATCTGTCTTCG-AGCA 1968
Query 1917 AGATCTGTAAGGACTCAAGGAAAGGTCTGAAACATTGGATCCAGAAGCTTGGACCAGTCC 1976
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1969 AGATCTGTAAGGACCCAAGGAAAGGTCTGAAACACTGGATCCAGAAGCTTGGACCAGTCC 2028
Query 1977 ATGGAGGAGGAGGAGGCGGTGGCAGCAGCAGCAGCGGCCTTGGTGGCTCGGCCTTGCCTA 2036
| | ||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2029 ACGCAGGAGGAGG---CGGTGGCAGCAGCAGCAGCGGCCTTGGTGGCTCAGCCTTGCCGA 2085
Query 2037 AGCCAAAATTCGCTTGAGAGAC-GTGAA-GAGTCTCTTTTGTAAATTTATATATAATACA 2094
|||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 2086 AGCCTAAATTCGCTTGAGAGACAG-GAAAGAGTCTCTTTTGTAAATTTATATATAATACA 2144
Query 2095 AAAAGAAGGGTTTTGTGTTTGTGTTGTATCCtttttttt-GTGGATTGTTGTTGTTAGTG 2153
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2145 AAAAGAAGGGTTTTGTGTTTGTGTTGTATCCTTTTTTTTTGTGGATTGTTGTTGTTAGTG 2204
Query 2154 ATCTTTCATCGTCAATGTCATATTCTCTGGATTTGATGTGTAATGACTGCCAACTGGGGA 2213
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2205 ATCTTTCATCGTCAATGTCATCTTCTCTGGATTTGATGTGTAATGACTGCCAACTGGGGA 2264
Query 2214 ATGGTTGTGATTTGATGTTTATGGGATTCAA 2244
|||||||||||||||| ||||||||||||||
Sbjct 2265 ATGGTTGTGATTTGATATTTATGGGATTCAA 2295
> AT3G46930.1 | Symbols: | Protein kinase superfamily protein
| chr3:17285643-17288032 FORWARD LENGTH=1844
Length=1844
Score = 555 bits (300), Expect = 9e-157
Identities = 900/1177 (76%), Gaps = 92/1177 (8%)
Strand=Plus/Plus
Query 752 GAA-ATACAGACAAACCCTGTAACTAATAAGCAGAGATCTGTTTCTCCCTCGCCTCAAAT 810
||| || |||| || || || ||||||||| |||||||||||||||| | |||||| ||
Sbjct 527 GAAGATGCAGAGGAATCCAGTTACTAATAAGAAGAGATCTGTTTCTCCGTTGCCTCATAT 586
Query 811 GGCTGTTCCTGATG-TGTTTAAGGAAGCAAGGTCGGAGCGTAAGAGATTTTCTACTCCAC 869
|||| || |||||| | |||| ||||||| ||| || |||||| |||||||||||||
Sbjct 587 GGCTCTTTCTGATGCT-TTTATCGAAGCAAAGTCTGATATTAAGAGGTTTTCTACTCCAC 645
Query 870 ATCCGAGACGGGTGGAATCGGAAAAGGGAATGAA-GCCTAAGT--T-ATCTCATAAAAAC 925
|||| ||| | |||||| | || ||||||||||| ||| |||| | || | ||| |
Sbjct 646 ATCCTAGAAGAGTGGAACCAGAGAAGGGAATGAAGGCC-AAGTCGTCGTCCCGCAAAGA- 703
Query 926 TCCTT-TGA-AAAGAGATCATTTAATTTGCGGT--C--TC-CA-TCAGGTCCTATCAGAG 977
| ||| ||| ||| | |||| ||||| | |||| | || || || |||||||| || |
Sbjct 704 TTCTTCTGAGAAA-AAATCAGTTAATCTACGGTCCCTGTCTCACTCGGGTCCTATTAGGG 762
Query 978 ATCTTGGCACTCTGAGAA-TTCAAGAGAGGGTG-AAGAGCAAGA-AGGACACAGGA-TGG 1033
||||| | || | || || || ||||||||| | |||||||||| | || | || | |
Sbjct 763 ATCTTAGTACGCAGA-AAGTTAAAGAGAGGG-GAAAGAGCAAGATA-GATA-AGAAGTCT 818
Query 1034 TCTAAGCT-TTTTGA-TAATACTGG-TCGTAGAGTGAGTGCTGTAGAAGCTTC-TGAAGA 1089
|| ||| | | |||| | ||| || || || ||| ||| ||| || || | | ||||||
Sbjct 819 TCAAAG-TCTGTTGACT-ATAGAGGTTC-TAAAGTAAGTTCTGCAGGAG-TGCTTGAAGA 874
Query 1090 GTTCCGT-GTTGATATGTCAAAGTTGTTCTT-TGGGCTTAAGTTTGCTCATGGGTTATAT 1147
| || | ||||| |||| |||||| |||| |||| || ||||||||| ||| ||||
Sbjct 875 ATGCC-TCATTGATGTGTCTAAGTTG-TCTTATGGGGATAGGTTTGCTCACGGGAAATAT 932
Query 1148 AGCCGGCTATACCATGGT-AAGTATGAAGATAAAGCTGTTGC-CGTGAAGCTTATCACTG 1205
|||| | | || |||||| || ||||||| ||||||||||| | ||||| ||||||| |
Sbjct 933 AGCCAGATTTATCATGGTGAA-TATGAAGGCAAAGCTGTTGCTC-TGAAGATTATCACAG 990
Query 1206 TACCTGATG--A-TGACGATAATGGATGCTTGGGAGCTCGTTTAGAGAAACAGTTTACCA 1262
||||| | | |||||| || || |||||||||||||||||| ||| |||||| |
Sbjct 991 CGCCTGAGGATAGTGACGA-CAT--ATTCTTGGGAGCTCGTTTAGAAAAAGAGTTTATCG 1047
Query 1263 AGGAAGTCACCCTTTTGTCTCGATTGACCCATCCAAATGTTATAAAG---G-T-GA-T-- 1314
||||| ||| ||||| |||||| | | |||||||||||| | ||| | | || |
Sbjct 1048 TGGAAGCCACTCTTTTATCTCGACTAAGCCATCCAAATGTCGTTAAGTTTGTTGGAGTGA 1107
Query 1315 -TTCT----TCTCTCTCTTTGTGGGAGCT-TTTACCT-GAAGGATCGTTAAGATCTTTTC 1367
| || || | || | ||| | | ||||| | ||| || |||||||| | ||
Sbjct 1108 ATACTGGAAACTGTATC-ATCACAGAG-TATGTACCTCG-AGGGTCTTTAAGATCATATC 1164
Query 1368 TGCACAAGCCT-GAGAATAGGTCTCTTCCTTTGAAAAAGCTTATAGAGTTTGCTCTAGAT 1426
|||||||| || ||| | | || ||||||||| || |||| || || |||| ||| |||
Sbjct 1165 TGCACAAG-CTCGAGCAGAAATCCCTTCCTTTGGAACAGCTAATCGATTTTGGTCTGGAT 1223
Query 1427 ATTGC-AAGAGGAATGGAATATATTCACTCACGACG-CATAATTCATCGGGATCTTAAGC 1484
||||| || |||||||||||||||||||||| || | ||| |||||| |||||| ||||
Sbjct 1224 ATTGCTAA-AGGAATGGAATATATTCACTCAAGA-GAGATAGTTCATCAGGATCTGAAGC 1281
Query 1485 CGGAAAATGTATTGATCGACGAA-GACTTCCATTTGAAGATCGCTGACTTTGGCATAGCG 1543
| ||||| || ||||||||| || ||||| || |||||||| ||||||||||||||||||
Sbjct 1282 CAGAAAACGTGTTGATCGAC-AATGACTTTCACTTGAAGATTGCTGACTTTGGCATAGCG 1340
Query 1544 TGCGAGGAGGAGTACTGTGACATGTTGGCTGATGACCCCGGAACATATCGGTGGATGGCA 1603
|||||||||||||||||||| | |||| ||| || ||||| ||| |||||||||||
Sbjct 1341 TGCGAGGAGGAGTACTGTGATGTTTTGGGGGATAACATAGGAACTTATAGGTGGATGGCA 1400
Query 1604 CCTGAAATGATAAAACGGAAACCACACGGGCGTAAG-GCCGATGTTTACAGCTTTGGACT 1662
|||||| | ||||||||| |||||| || || ||| || |||||||| || ||||||||
Sbjct 1401 CCTGAAGTTTTAAAACGGATACCACATGGACGGAAGTGC-GATGTTTATAGTTTTGGACT 1459
Query 1663 -CGTTTTATGGGAAATGGTAGCTGGGGCAATCCCGTATGAGGACATGAA-TC--CT-ATT 1717
| |||||||||||||||||||||| ||| | || |||||||| ||||| | || |
Sbjct 1460 TC-TTTTATGGGAAATGGTAGCTGGAGCACTTCCATATGAGGAGATGAAATTTGCTGAA- 1517
Query 1718 CAAGCTGCTTTCGCAGTCGTACACAAGAACATTAGGCCAGCTATTCCGG-GAGATTGTCC 1776
||| ||| | |||||| || ||||||| |||||||||| ||| ||| | ||||||||
Sbjct 1518 CAAATTGCCTACGCAGTTATATACAAGAAAATTAGGCCAGTTATACCGACG-GATTGTCC 1576
Query 1777 AGTAGCCATGAAAGCTCTGATAGAGC-AGTGTTGGTCGGTTGCAC-CGGATAAGAGACCA 1834
|| |||||||||| ||||| |||| | |||||||| | ||| | || ||||||||
Sbjct 1577 AGCGGCCATGAAAGAGCTGATCGAGCGA-TGTTGGTCA-TCGCAAACAGACAAGAGACCG 1634
Query 1835 GAGTTCTGGCAGATAGTGAAAGTGCTTG-AACAGTTT 1870
|| ||||||||||| || |||||| ||| |||| |||
Sbjct 1635 GAATTCTGGCAGATTGTCAAAGTG-TTGGAACA-TTT 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111344808810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5