BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479992
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24730.1 | Symbols: | mRNA splicing factor, thioredoxin-lik... 841 0.0
> AT3G24730.1 | Symbols: | mRNA splicing factor, thioredoxin-like
U5 snRNP | chr3:9030006-9030894 REVERSE LENGTH=626
Length=626
Score = 841 bits (455), Expect = 0.0
Identities = 555/600 (93%), Gaps = 19/600 (3%)
Strand=Plus/Plus
Query 1 ATGAGTTATCTTTTGAAGGCGTTAACGAAGAAGGAAGAGATTGATCGGATCATCAGAGAC 60
|||||||||||| ||||| ||||||||| ||||||||||||||||||| | |||||||||
Sbjct 25 ATGAGTTATCTTCTGAAGACGTTAACGACGAAGGAAGAGATTGATCGGGTTATCAGAGAC 84
Query 61 ACCATTGATGAAGTTCTTGTTTTACGATTTGGTCGTTGCTCTGACGACGTTTGTCTTCAG 120
||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 85 ACCATTGATGAAGTTCTTGTTTTACGATTTGGTCGTTCCTCCGACGCCGTTTGTCTTCAG 144
Query 121 CATGACGAAATTCTTGCGAAATCGGTGAGAGATGTTTCGAAATTCGCTAAGGTAGCTTTG 180
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 145 CATGATGAAATCCTTGCGAAATCGGTGAGAGATGTTTCGAAATTTGCTAAGGTAGCTTTG 204
Query 181 GTTGATGTTGATTCAGAGGAAGTTCAAGTGTATGTGAAGTATTTTGACATTACTTTGTTT 240
|||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 205 GTTGATGTTGATTCAGAGGATGTTCAAGTGTATGTGAAGTATTTTGATATCACGTTGTTT 264
Query 241 CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGAACTGCGGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGAACTGCGGAT 324
Query 301 CATACTAAATGGATTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGGCA 360
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 CATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGGCT 384
Query 361 ATATATCGAGGAGCGATGAAAGGGAAGATGATTGTTCAATGTCCGATTCCGCCGGAGAGA 420
|||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 385 ATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATACCGCCAGAGAGG 444
Query 421 ATACCAAAGTATCAACTCTTGTACAAGGATGTGTAGA-AGCTAAA-TT----------AC 468
||||||||||| || ||| |||||||||||||||||| | ||||| || ||
Sbjct 445 ATACCAAAGTACCAGCTCGTGTACAAGGATGTGTAGACA-CTAAAGTTTGTTGTGCTTAC 503
Query 469 AATGCAAAATCTGTTTCTCATTCTT-T-TAGTTGGCAATAATATTTACATT-GACATTTT 525
||||||||||||||||||||| ||| | | ||||||||||||||||||||| ||||||||
Sbjct 504 AATGCAAAATCTGTTTCTCAT-CTTCTGT-GTTGGCAATAATATTTACATTTGACATTTT 561
Query 526 GAGATTTACATTTATGTTTTTGTACAACAGTTGAAGAATGAGAATAAATATGCAGATTTT 585
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 562 GAGATTTACAGTTATGTTTTTGTACAA-AGTTGAAGAATGAGAATAAATATGCAGATTTT 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5