BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479993
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24740.1 | Symbols: | Protein of unknown function (DUF1644)... 2425 0.0
> AT3G24740.1 | Symbols: | Protein of unknown function (DUF1644)
| chr3:9031097-9033796 FORWARD LENGTH=1734
Length=1734
Score = 2425 bits (1313), Expect = 0.0
Identities = 1553/1666 (93%), Gaps = 28/1666 (2%)
Strand=Plus/Plus
Query 1 GAGAAATCAAAATCATCGATTCTCCTTTGTTTCGCCTAACCCAATTCCTAAATCTCAGCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 GAGAAATCAAAATCATCGATTCTCCTTTGTTTCGCCTAACCCAATTCCTAAATCTCAGCA 91
Query 61 TCTTTCATCAATCCAATCTCTCAAAT-AGCGAAAGAGAGAAACAAAGATCATCCAATCCT 119
|||||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||
Sbjct 92 TCTTTCATCAATCCAATCTCTCAAATAAGCG--AGAGAGAAACAAAGATTATCGAATCCT 149
Query 120 TGGAGACGAACACATACTCCAATTTGTTTTAGGACATTTGGGTTGCCCTCTGGCTTAA-- 177
|||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 150 TGGAGACGAAAACATACTCCAATTTGTTTTAGGACATTTGGGTTACCCTGAGGCTTAAGG 209
Query 178 CGAATAGTGGTTTAGTTATTTATGCTGAATTTGGTGTCATTCGGA-TTCTCAGAGGATTA 236
|||||||||||||||||||||| |||||||| ||||||||| || || || |||||||
Sbjct 210 AGAATAGTGGTTTAGTTATTTATACTGAATTTTGTGTCATTCAGACTT-TCCGAGGATTT 268
Query 237 TCTGTTTGGTACTGTTTGGTTCGT-TGGTGTTTTCATTTGATCTGCATTTTAAAGTTTTA 295
|||||||||||| ||||| |||| | |||||||||||||| |||||| |||||| | |
Sbjct 269 TCTGTTTGGTACCGTTTGCCTCGTCT-GTGTTTTCATTTGAGCTGCATCTTAAAG-TGAA 326
Query 296 AGCTCGGCGCTGAAATAGTAAGAAAGTAGAT-TTTCAAAAGGCTGCTAATAAGATTGCTC 354
|| || | ||| ||| ||||| ||||||| | |||||| |||||||||||||||||||||
Sbjct 327 AGTTCAGTGCTTAAACAGTAATAAAGTAG-TATTTCAACAGGCTGCTAATAAGATTGCTC 385
Query 355 CCTTTCGCTTACTCAGTGCTTAACAAGATGGCTGGTGTAAAGCGAAAATTAAGTACCGAG 414
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CCTTTCGCTTACACAGTGCTTAACAAGATGGCTGGTGTAAAGCGAAAATTAAGTACCGAG 445
Query 415 TCAGATGTTCATGCTCTTCACAAAGAACTGGATGAGGTTTCATGTCCTGTTTGCATGGAT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TCAGATGTTCATGCTCTTCACAAAGAACTGGATGAGGTTTCATGTCCTGTTTGCATGGAT 505
Query 475 CACCCACATAATGCTGTTCTACTGCTGTGCAGCTCTCATGACAAAGGTTGCAGGTCCTAC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 CACCCACATAATGCTGTTCTACTGCTGTGCAGCTCTCATGACAAAGGTTGCAGGTCCTAC 565
Query 535 ATCTGTGATACCAGTTACCGACATTCCAATTGCCTCGACCGGTTTAAGAAATTGCATTCT 594
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 566 ATCTGTGATACCAGTTACCGACATTCCAATTGCCTTGACCGGTTTAAGAAATTGCATTCT 625
Query 595 GAATCCCCTAATGACCCTACTCCCGAGGGGAACTTGGCTTCAAGGGAAAATAATAACGAA 654
|||||| | ||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 626 GAATCCGCAAATGACCCTACTCCCGAGGCGAACTTGGCTTCAAGGGAACATAATAACGAA 685
Query 655 TCTCTAAACGAGCATGGTACAGCCAGTCGAAGCAGTTTTCTTCGGGAGTCTACAAACCGA 714
|||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 686 TCTCTATACGAGCATGGTACAGCCAGTCGAAGCAGTTTTCACCGTGAGTCTGGAAACCGA 745
Query 715 GGCTCTGCTTGGGATTCCGAATCGCTGAGGAGGAGGAGGAGAGTGGATGAAGAAGA-GCA 773
|||||| |||||||||||||||| |||||||||||||||||||| || ||||||| | |
Sbjct 746 GGCTCTTCTTGGGATTCCGAATCACTGAGGAGGAGGAGGAGAGTTGAGGAAGAAGTTG-A 804
Query 774 GTCAGAAGATATCACAAATTTGAAATGTCCTCTTTGCCGGGGTACTGTTTTAGGATGGAA 833
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 805 GTCAGAAGATATCACAAATTTGAAATGTCCTCTATGCCGGGGTACTGTTTTAGGATGGAA 864
Query 834 GGTTGTAGAAGAAGTAAGAACATATCTTGATCTTAAGAACCGAAGTTGCTCCCGAGAATC 893
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 865 GGTTGTAGAAGAAGTAAGAACGTATCTTGATCATAAGAACCGAAGTTGCTCCCGAGAATC 924
Query 894 CTGTTCATTTACTGGAAACTACCAGGATCTGCGCCGTCATGCCAGAAGGACACACCCAAC 953
||| ||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 925 CTGCTCATTTACTGGCAACTACCAGGATCTGCGCCGCCATGCCAGGAGGACTCACCCAAC 984
Query 954 AACTCGTCCTTCAGATACTGATCCATCAAGAGAGAGAGCTTGGAGGCATCTTGAGAACCA 1013
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 985 AACTCGTCCTTCAGACACTGATCCATCAAGAGAGAGAGCTTGGAGGCGGCTTGAGAACCA 1044
Query 1014 GAGGGAGTATGGAGATATAGTCAGTGCAATCCGTTCTGCCATGCCCGGTGCTGTTGTAGT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GAGGGAGTATGGAGATATAGTCAGTGCAATCCGTTCTGCCATGCCCGGTGCTGTTGTAGT 1104
Query 1074 AGGGGACTATGTTATAGAAAACGGAGATAGGTTCT-CAGGTGAGAGGGAAACGGGAAATG 1132
||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1105 AGGAGATTATGTTATAGAAAACGGAGATAGGTT-TGCAGGTGAGAGGGAAACGGGAAATG 1163
Query 1133 GTGGGAGCGACCTTTGGACCACTTTAGTATTGTTTCAGATGATTGGTTCTCTTGACAATG 1192
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1164 GTGGGAGCGACCTTTGGACCACTTTACTATTGTTTCAGATGATTGGCTCTCTTGACAATG 1223
Query 1193 GAGGTTCTAGCGCTAGTGGCAGTGGTGGCGGTTCAAGATCCCACAGGTCAAGGGCATGGA 1252
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1224 GAGGTTCTAGCGCTAGTGGGAGTGGTGGTGGATCAAGATCCCACAGGTCAAGGGCATGGA 1283
Query 1253 GGAATCATCGACGTTCGTCTTCAGATAGAC-GATACCTTTGGGGGGAGAATCTATTAGGT 1311
|||||||||| ||||| ||||||||||| | | ||||||||||||||||||||||| |||
Sbjct 1284 GGAATCATCGGCGTTCATCTTCAGATAGGCCG-TACCTTTGGGGGGAGAATCTATTGGGT 1342
Query 1312 CTACAAGAAGAACACAATAACAACGATGATGAAGAGTTGCATATGCAGAACGATGCAGGC 1371
|||||||| || | |||||||||||||||||||||||| | | ||||||| |||||||||
Sbjct 1343 CTACAAGATGAGCGCAATAACAACGATGATGAAGAGTTTCGTTTGCAGAATGATGCAGGC 1402
Query 1372 GGTGCTTCTACTCCTGTTCCAAGAAGAAGACGGAGATTCGGACGTCCTAGATCAAGCGGA 1431
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1403 GGTGCTTCTACTCCTGTTCCAAGAAGAAGAAGGAGATTTGGACGTCCTAGATCAAGCGGA 1462
Query 1432 AATCATCCGCGATAAACCGAATCATCCGCG-TGCTATCGATATCTCTCGGGTCAGAACCA 1490
||||||||||||||| | ||| | ||| || || ||||||||||||||||||||||||||
Sbjct 1463 AATCATCCGCGATAAGCTGAAGCGTCC-CGGTGATATCGATATCTCTCGGGTCAGAACCA 1521
Query 1491 GGCCGATGCAAAGGGAAAGGTTTTGCTGAAAACCCGAGAGCCTTAGGATTGTTTGGTGTT 1550
|||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||
Sbjct 1522 GGCCGATGCAAAGGGAAAGGTTTTACTAAAAACCCGAGAGGCTTAGGATTGTTTGGT-TT 1580
Query 1551 TATGTAAATGTCATTTTGAGCCTCGTTAAGTCGCTCATTGTATACTACTAAGTATGGCTT 1610
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1581 TATGTAAATGTCATTTTGAGCCT--T---G--GCTCATTGTATACTACTAAGTATGGCTT 1633
Query 1611 TTTATGCAATGTCTTCTGTTAATTAACTCGTGGATTATTTTCTTTT 1656
|||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1634 CTTATGCAATGTCTTTTGTTACTTAACTCGTGGATTATTTTCTTTT 1679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81826888350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5