BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479995
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24760.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2001 0.0
> AT3G24760.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:9040088-9041834 FORWARD LENGTH=1444
Length=1444
Score = 2001 bits (1083), Expect = 0.0
Identities = 1328/1440 (92%), Gaps = 41/1440 (3%)
Strand=Plus/Plus
Query 1 AAAAATGTCAGACAACAATCCAGAAATCGAATCATCAACCTTCAACACTCTAAACCA-CG 59
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 17 AAAAATGTCAGACAACAATCCAGAAATCGAATCATCAACCTTCAACAATCTAAA-CATCG 75
Query 60 ACGTCACTGAATCAATCCTCTCCCACCTCCCAATCCCTTCCTTAGTCCGTTTCACTCTCG 119
||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 76 ACGTCACAGAATCAATCCTCTATCATCTCCCAATCCCTTCCTTAGTCCGTTTCACTCTCG 135
Query 120 TCTCCAAACAATGGCGTTCCA-TAATCACCTCTCTTCCTCCTTCTCCTTCTCCATCGT-C 177
|||||||||||||||||| || | ||||||||||||||||||||||||||||| || | |
Sbjct 136 TCTCCAAACAATGGCGTT-CACTCATCACCTCTCTTCCTCCTTCTCCTTCTCCTTC-TCC 193
Query 178 ATCATCACCACCATGGCTCTTCCTCTTCGGTATCCACAACACTTCCTCTTTCCACAACCA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 ATCATCACCACCATGGCTCTTCCTCTTCGGTATCCACAACACTTCCTCTTTCCACAACCA 253
Query 238 Atccttcgctttcgatcctctctccaactcttggcttcgcctccctccttcctcttcctc 297
|||||||||||||||||||||||||||| | ||||| || |||||||||||||| || ||
Sbjct 254 ATCCTTCGCTTTCGATCCTCTCTCCAACACCTGGCTCCGTCTCCCTCCTTCCTCCTCTTC 313
Query 298 ctccGATCACCTCGTCGGATCTAATCGCTTCCTCTTCACCACCGCTCCTCGATTCTCCTT 357
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 314 CTCCGATCATCTCGTCGGATCTAATCGCTTCCTCTTCACCACCGCTCCTCGCTTCTCCTT 373
Query 358 CTCACCGATCCTTAAACCTAATTGGCGATTCACTTCCCCTGTTCTG-TTTCCTCGAATCA 416
|||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 374 CTCACCAATCCTTAAACCTAATTGGCGATTCACTTCCCCTGTTC-GATTTCCTCGAATCA 432
Query 417 ATCCTCTCTTAAGCGTTTTCACAACTCTCTCTAACTCCTCTAAGCTAATCCTCGTTGGTG 476
|||||||||||| ||||||||||||||| |||||||| || || ||||||||||| ||||
Sbjct 433 ATCCTCTCTTAACCGTTTTCACAACTCTATCTAACTCATCCAAACTAATCCTCGTCGGTG 492
Query 477 GATCTTCGCGTATCGGCGGATTAGTCGATATCGAGGAACGGTTAGCTGTTCAGGTTTACG 536
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||
Sbjct 493 GATCTTCGCGTATCGGCGGATTAGTCGATATCGAAGAACGATTAGCTGTTCAAATCTACG 552
Query 537 ATCCTGTTCTTGATTCATGGGAGCTTTGTTCACCACTTCCTGCTGATTTTAGATCTGGTC 596
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 553 ATCCTGTTCTCGATTCATGGGAGCTTTGTTCACCACTCCCTGCTGATTTCAGATCTGGTC 612
Query 597 AAGATCATCAAACTTTGACTTCAGCTTTGTTTAAGAGAAGATTCTACGTTTTCGATAACT 656
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 613 AGGATCATCAAACTTTGACCTCAGCTTTGTTTAAGAGAAGATTCTATGTTTTCGATAACT 672
Query 657 ATTCGTATTTTATCTCGTCGTTTTGCTTGGATTCTTATACATGGAGTGATGTTCAAACGC 716
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 673 ATTCGTGTTTTATCTCGTCGTTTTGCTTGGATTCATATACATGGAGTGATGTTCAAACTC 732
Query 717 TTAAACCACCTGGACTCTCGTTTGCGTT-CTTGAATTCTTGTAATGGTATGCTTGTTCTT 775
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 733 TTAAACCACCAGGACTCTCGTTTGC-TTACTTGAATTCTTGTAATGGTATGCTTGTTCTT 791
Query 776 GGTGGAATGTGCGGGTTTTCGTTTAATCTTTGGAGTATCGAAGAAGGTTCGATGGAATTT 835
||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 792 GGTGGAATGTGTGGGTTCTCGTTTAATCTTTGGAGTATTGAAGAAGGCTCGATGGAATTT 851
Query 836 AGCGAAATCGCGGTTATGCCTGAGGATTTGTTGTTTGGATTAGTTGATAATGAAGATGAG 895
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 852 AGCGAAATCGCGGTTATGCCTGAGGATTTGTTGTTTGGATTAGTTGATAGTGATGATGAG 911
Query 896 GAGGATAAGTTTAGGAGTTTGAAATGTGTTGGCTCTGGGAATCTTGTTTATGTGTTTAAC 955
|| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 912 GATGACAAGTTTAGGAGTTTGAAATGTGCTGGCTCTGGGAATCTTGTTTATGTGTTTAAT 971
Query 956 GATGATTGTCATAAGAAATTTCCAGCTTGTGTTTGTGAGATTGGTGGTGGTGAGAATGGG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GATGATTGTCATAAGAAATTTCCAGCTTGTGTTTGTGAGATTGGTGGTGGTGAGAATGGG 1031
Query 1016 AAATGTAGTTGGAGAAGAGTTCCTTGTTTGCCTTCTCCGGTTAATAAGTTTCATAAAGTT 1075
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 ATATGTAGTTGGAGAAGAGTTCCTTGTTTGCCTTCTCCGGTTAATAAGTTTCATAAAGTT 1091
Query 1076 GTTAGTTTCTGCTCAACGGTATCTATTAGCGATGTTTTTCGCCCCGAGGATGCTCAGATT 1135
|||||||||||||||||||| ||||||| ||||||||| | ||||||||| |||| ||||
Sbjct 1092 GTTAGTTTCTGCTCAACGGTGTCTATTACCGATGTTTTCCACCCCGAGGAAGCTCGGATT 1151
Query 1136 GG---T--G----GT--T-GAGTTTGCTTACTGATAATGTAAAGTGGAGATGAAGGGAGA 1183
|| | | || | ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1152 GGCGGTTCGATCCGTGGTTGAGTTTGCTTAGTGCTAATGTAAAGTGGAGATGAAGGGAGA 1211
Query 1184 AGATA-AATAATGAAGTGTATAAAGATTGTTATCAATTTATCATGGTAATTAGGT----- 1237
|||| |||||||||||||||||| || ||||||||||||| |||||||| | ||
Sbjct 1212 AGATTTAATAATGAAGTGTATAAAAATGGTTATCAATTTATTATGGTAATCATGTAATTA 1271
Query 1238 G---TAAACTGGGTTATAATTCTTCGTTTAAATGTATGAATCATTTACGTACATACACAT 1294
| |||||||| ||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1272 GACGTAAACTGGTTTATAATTCTTCGTT-----GTATGAATCATTTACATACATACACAT 1326
Query 1295 GTCTACTGAATCATTAAGTATTGTTGATTTTTTGGTATAAGTGAGTGTGTTTTCACAATC 1354
||||| ||||||||||||||||||| ||| || ||||| |||||||||||||||||||
Sbjct 1327 ATCTACAGAATCATTAAGTATTGTTG-TTTGTT--TATAAATGAGTGTGTTTTCACAATC 1383
Query 1355 TCTTGTACCAAAGCATA-CTAACATTGATACGTTCTAATGAATTATATTAAGTATTGTTG 1413
|||| |||||||||| | |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1384 TCTTATACCAAAGCA-AGCTAACATTTATACGTTCTAATGAATTCTATTAAGTATTGTTG 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5