BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479998
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24800.1 | Symbols: PRT1 | proteolysis 1 | chr3:9055509-9057... 1958 0.0
> AT3G24800.1 | Symbols: PRT1 | proteolysis 1 | chr3:9055509-9057998
FORWARD LENGTH=1580
Length=1580
Score = 1958 bits (1060), Expect = 0.0
Identities = 1269/1365 (93%), Gaps = 33/1365 (2%)
Strand=Plus/Plus
Query 70 tctctctttctctctctctct-tctTTTGTGATAACAATGGCCCAACCTATGAACGATAT 128
||||||| ||||||||||||| ||| ||| ||||||||||||| || ||||||| |||||
Sbjct 108 TCTCTCTCTCTCTCTCTCTCTCTCTCTTGCGATAACAATGGCCGAAACTATGAAAGATAT 167
Query 129 TACGGTGAAGAACAATGAATCACACGAAGAAGAAATCCCCGATCAATTTCTCTGCTGCGT 188
|||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 168 TACGATGAAGAACGATGAATCACAGGAAGAAGAAATCCCCGATCAATTTCTCTGCTGCGT 227
Query 189 TTGCCTGGAACTTCTTTACAAGCCAATTGTGTTATCTTGTGGTCATCTATCATGTTTTTG 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TTGCCTGGAACTTCTTTACAAGCCAATTGTGTTATCTTGTGGTCATCTATCATGTTTTTG 287
Query 249 GTGTGTACATAAGTCCATGAATGGCTTTCGCGAGTCTCATTGTCCGATATGTAGAGACCC 308
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 288 GTGCGTACATAAGTCCATGAATGGCTTTCGTGAGTCTCATTGTCCGATATGTAGAGACCC 347
Query 309 GTATGTTCACTTTCCGTCTGTGTGCCAGAAGCTTCATTTTCTACTGAAGAAGATGTACCC 368
||||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 348 GTATGTTCACTTTCCCTCTGTGTGCCAGAAGCTTTATTTTCTGTTAAAGAAGATGTACCC 407
Query 369 A-TTAGCGCATAAGAAGAGAGAAGAACAAGTTCTAAAGGAAGAACAAGAACTAGATTGTT 427
| || || |||||||||||||||||||||||| |||||||||| ||||||| ||| ||||
Sbjct 408 ACTT-GCTCATAAGAAGAGAGAAGAACAAGTTTTAAAGGAAGAGCAAGAACGAGAATGTT 466
Query 428 TTTCTCCTCAGATTGATGTTGTTTTGGATGAATCAAAGGTTAAGGATGTGTCTGTATGTA 487
||||||||||||||||| ||||||| | | | | | ||||||| ||||
Sbjct 467 TTTCTCCTCAGATTGATCTTGTTTT-G--G------A---T-----T-TGTCTGTGTGTA 508
Query 488 GTGGAGATTCTCTAAATGTCTCTGATAAACAGAAGGTGGATGAGTGTTCGAATGCAGCGA 547
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 509 GTGGAGATTCTCTCAATGTCTCTGATAAACAGAAGGTGGAAGAGTGTTCGAATGCAGCGA 568
Query 548 ACTTATTATCTAGTTCATCAAGTAGAGGTGGCAGTCCATGTATCCCCAGCAATCAAGAAC 607
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 569 ACTTATTATCTAGTTCATCAAGTAGAGGTGACATTCCATGTATCCCCAAAAATCAAGAAC 628
Query 608 CCACAGATGCACAAA-CTCTTAACGTTCATGAGAATGAATTACCTAAGAATAACAAAGTC 666
||||||||||| ||| ||||||| |||||||| |||||||||| |||| |||||||||||
Sbjct 629 CCACAGATGCA-AAAGCTCTTAATGTTCATGAAAATGAATTACTTAAGGATAACAAAGTC 687
Query 667 AGTAATCAGATTTCGAAAGATGATTTGCTCTGTTCAGCATGTAAGGAGCTACTTGTGCGA 726
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 688 AGTAAGCAGATTTCGAAAGATGATTTGCTCTGTTCAGCATGTAAGGAGCTGCTTGTACGA 747
Query 727 CCCGTAGTTCTCAATTGCGGACATGTGTATTGTGAAGGATGTGTAGTAGATATGGCTGAA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 CCCGTAGTTCTCAATTGCGGACATGTGTATTGTGAAGGATGTGTAGTAGATATGGCTGAA 807
Query 787 GAAAGCGAAAAGATCAAATGTCTAGAGTGTAATGTTTGTGACCCAAGAGGATTTCCAAAA 846
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 808 GAAAGCGAAAAGATCAAATGTCAAGAGTGTAATGTTTGTGACCCAAGAGGATTTCCAAAA 867
Query 847 GTTTGTTTGATTCTTGAACAGCTTTTGGAGGAAAATTTTCCTGAAGAATATAAATCAAGG 906
||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 868 GTTTGTTTGATTCTTGAACAGCTTTTGGAGGAAAACTTTCCTGAAGAATACAATTCAAGA 927
Query 907 A-CAAGT-GGGATTCAGAAAAGGCTTGCCCATAATAGCAAAGGAAATTTTCAAAGCCATC 964
| | ||| || ||||||||| ||| ||||||||||||||||||||| |||||||| |||
Sbjct 928 AGC-AGTAAGG-TTCAGAAAACGCTCGCCCATAATAGCAAAGGAAATATTCAAAGCTATC 985
Query 965 TCAAAGAAGGCCCATCGTTATCAAACGACAACAACGATGATCTTCCCTGGTTGGCAAACC 1024
||||||||||||| || |||||||||||||| ||| ||||| |||||||||||||||||
Sbjct 986 TCAAAGAAGGCCCGTCCTTATCAAACGACAATAACAATGATGATCCCTGGTTGGCAAACC 1045
Query 1025 CTGGATCAAATGTTCACTTTGAAGCTGGTTGTGATTCTTGTGGAGTGTATCCAATCATAG 1084
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1046 CTGGATCAAATGTTCACTTTGGAGCTGGTTGTGATTCTTGTGGGGTGTATCCAATCATAG 1105
Query 1085 GGGATCGATACAGATGCAAAGACTGCAAGGAGGAAATTGGGTATGACCTTTGCAAAGACT 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 GGGATCGATACAGATGCAAAGACTGCAAGGAGGAAATTGGGTATGACCTTTGCAAAGACT 1165
Query 1145 GTTACGAGACTCCTTCGAAAGTTCCAGGGAGATTCAACCAGCAACACACTCCTGACCACA 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 GTTACGAGACTCCTTCGAAAGTTCCAGGGAGATTCAACCAGCAACACACTCCTGACCACA 1225
Query 1205 GGCTTGAGCTCGCGAGGG-CTCCTCAGGTTCTGATCAATTTCAATTCTATCGGTATCCTT 1263
|||||||||| || | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 GGCTTGAGCTTGC-ACGGTCTCCTCAGGTTCTGATCAATTTCAATTCTATCGGTATCCTT 1284
Query 1264 CTCGGACCCTCGGATATCTCAACTGAAGCCATGGATACAGATGAGGGCGAGGAAGGGCCT 1323
||||||||| | |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 1285 CTCGGACCC--GT-TATCTCAAATGAAGGCATGGATACAGATGAAGGCGAGGAAGGGCCT 1341
Query 1324 CGGGGTTCTTCTAATGAGTCACCAAGCACAGAATGAAATAGCAGTCAAGTATTAATGCAT 1383
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1342 CCTGGTTCTTCTAATGAGTCATCAAGCACAGAATGAAATAGCAGTCAAGTATTAATGCAT 1401
Query 1384 ATGCTTTCGCTTTGTGTTTGCGTTTGTTATTGTATTTATATCTTC 1428
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1402 ATGCTTTCGCTTTGTGTTTGCGTTTGTTATTGTATTTATA-CTTC 1445
Score = 156 bits (84), Expect = 7e-37
Identities = 91/94 (97%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 1 ACGGCGGTGGATATTGGCCCTTGCCGCAAAAGCAAAAGCTATCGCCACCACCGTTTCATA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ACGGCGGTGGATATTGGCCCTTGCCGCAAAAGCAAAAGCTATCGCCACCACCGTGTCATA 60
Query 61 AATCTCAGAtctctctttctctctctctct-tct 93
|||||||||||||||| ||||||||||||| |||
Sbjct 61 AATCTCAGATCTCTCTCTCTCTCTCTCTCTCTCT 94
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71535776625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5