BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480000
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24820.1 | Symbols: | BSD domain-containing protein | chr3:... 926 0.0
> AT3G24820.1 | Symbols: | BSD domain-containing protein | chr3:9062365-9064378
REVERSE LENGTH=832
Length=832
Score = 926 bits (501), Expect = 0.0
Identities = 551/576 (96%), Gaps = 0/576 (0%)
Strand=Plus/Plus
Query 1 AGGATCAGCAATGAATATAGCTTCGAGGATTCGACGAAGTTTTTTCAGAGAGAAGAAGGA 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3 AGGATCAGCAATGAATATAGCTTCGAGGATTCGACGAAGTTTTTTAAGAGAGAAGAAGGA 62
Query 61 ATATTCCGATGGGAATATCTTGAAGAATGGATCGAGTGTTAAGGAAGAAGGTAAAGATGA 120
|| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 ATCTTCAGATGGGAATAGCTTGAAGAATGGATCGAGTGTTAAGGAAGAAGGTAAAGATGA 122
Query 121 GATTTTGGGAGTTACTGATGAATTAATCGATCATGTCAGATCTTTCACCATTGATACGTT 180
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 123 GATTTTGGGAGTTACTGATGAGTTAATCGATCATGTCAGATCCTTCACCATTGATACGTT 182
Query 181 TAAGAACTTTTCTCTTGAAGATGAAGAAGAAGAAGTATCTGTGAGTCATTTGGGAGATGA 240
||||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 183 TAAGAACTTCTCTCTGGAAGATGAAGAAGAAGAAGTATCTGTGAATCCTTTGGGAGATGA 242
Query 241 AGATAATGGAATGAGTTCGTCTGTGAATGTGAAGAAGGATTTGTCTGATTGGCAAGAGAA 300
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 243 AGATAATGGAATGAGTTCATCTGCAAATGTGAAGAAGGATTTGTCTGATTGGCAGGAGAA 302
Query 301 ACACGCGGTTCTTGTCTTATCGAAATCTAAGGAACTCTCACAGCTGAGATTCAAGTTATG 360
|||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 303 ACACGCGGTTCTCGTGTTATCGAAATCGAAGGAACTCTCACAGTTGAGATTCAAGTTATG 362
Query 361 CCCGCGAGTTTTAAAGGAACATCAGTTTTGGAGGATATATTTCCAGCTTGTGAGGAAGCT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 363 CCCGCGAGTTTTAAAGGAACATCAGTTTTGGAGGATATATTTCCAGCTTGTGAGGAAGAT 422
Query 421 TGTGGCAAAGTATGAGGTGCTAGCAATCCAACAGGCTAAAATAAGGAGGATGGCCATGGA 480
||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 423 TGTGGCAAAATATGAGGTGCTAGCAATCCAACAGGCTCAAATCAGGAGGATGGCCATGGA 482
Query 481 AGACAGTAAAACTTCTGAAACCAAGGGTGTATATGAAGTTGAAATGTCAGAAACAAAACA 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 483 AGACAGTAAAACTTCTGAAAGCAAGGGTGTATATGAAGTTGAAATGTCAGAAACAAAGCA 542
Query 541 AAGGTTGAGTACAGGACCAGCAACTCCGTGAAGCTT 576
|||||||||||||||||| |||||||||||||||||
Sbjct 543 AAGGTTGAGTACAGGACCTGCAACTCCGTGAAGCTT 578
Score = 161 bits (87), Expect = 7e-39
Identities = 124/140 (89%), Gaps = 9/140 (6%)
Strand=Plus/Plus
Query 628 GGTGACAAAACCAAGAAGGTTTTGATTCTACGGAGGTGTAAATGATCATGTGA-TTT--T 684
||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||| |
Sbjct 693 GGTGACAAAACCAAGAAGGTTTTGATTCTTCAGAGATGTAAATGATCATGTGAATTTAGT 752
Query 685 ----GTATCAGACATGAA-ACAGTAGTCTTAAACGCTTTGTAGTAACAAGAATCGACATC 739
||||||||||| || ||||| ||||||||||||||||| ||| |||||| ||||||
Sbjct 753 ACTAGTATCAGACAT-AACACAGTGGTCTTAAACGCTTTGTACTAATAAGAATAGACATC 811
Query 740 ATTATTTAATGTTTTGATTC 759
||||||||||||||||||||
Sbjct 812 ATTATTTAATGTTTTGATTC 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5