BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480001 Length=817 Score E Sequences producing significant alignments: (Bits) Value AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) ... 983 0.0 AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding ... 935 0.0 AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) ... 902 0.0 AT1G32030.1 | Symbols: | Domain of unknown function (DUF313) ... 220 1e-56 > AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) | chr3:9071105-9072184 FORWARD LENGTH=1080 Length=1080 Score = 983 bits (532), Expect = 0.0 Identities = 634/684 (93%), Gaps = 4/684 (1%) Strand=Plus/Plus Query 136 GAGACGAAAACACTACAAAACCCTAGTTCTGAATC-TTGTTCTTCACTCGTACTCTTTGA 194 ||| ||||||| ||||||||||||||||||||| | |||||| ||||||||||||| ||| Sbjct 397 GAGGCGAAAACCCTACAAAACCCTAGTTCTGAA-CTTTGTTCATCACTCGTACTCTCTGA 455 Query 195 TTACAAGATGGCTGAGTCCGAGAAGACAGAGACGAAAGACCCACTAAACCCTCTGTCTTT 254 |||||||||||||||||| || |||| |||||||||||||||| ||||||||||||||| Sbjct 456 TTACAAGATGGCTGAGTCGGAAAAGATGGAGACGAAAGACCCACCAAACCCTCTGTCTTT 515 Query 255 GGGCCTATCGGAGAACACAAGCCGCAAGAGACGTGCCGTAAAAGAGAGGAAGCGTACTGG 314 | ||||| ||| |||||||||||||||||||||||| || |||||||||| ||||| || Sbjct 516 GTGCCTAACGGGGAACACAAGCCGCAAGAGACGTGCTGTGGAAGAGAGGAAACGTACCGG 575 Query 315 TGGATTCAAGAAAGCAAAGGTTGCTCCTTTTCCACGGACAGCGAGAGAGACGCCTGAGTG 374 |||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||| Sbjct 576 TGGATTCAAGAAGGCAAAGGTTGCTCCTTTTCCAGGGACAGCGAGAGATACGCCTAAGTG 635 Query 375 GCTTGTCAAGGTGATGAGTGACATGAAAGAAGCTAAAGACGCTAAACTGATCTTTGAGAA 434 |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| Sbjct 636 GCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGATGCTAAACTGATCTTTGAGAA 695 Query 435 GACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTCAACAA 494 ||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 696 GACTCTGTTTGTGACTGATATAAACCCAACACAGAACCGTCTCTCAATGCCGTTCAACAA 755 Query 495 CTTACTCCGCAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAGACAAAGACATCAA 554 |||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 756 CTTACTCCAAAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAAAGGAAGACATCAA 815 Query 555 CAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTG-AGAAGTGGG 613 |||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 816 CAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTGTA-AAGTGGG 874 Query 614 GTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATTACA 673 ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||| Sbjct 875 GTGTGATGTTGAAAAGATGGGAGCTGAAGAAGGAATCAGGAAAAGGAAGCTGGAACTACA 934 Query 674 ATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTGAAAGATGGCGACAACA 733 || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 935 ATCTGATTTGTGGGTGGAACGATGTCGTTGAGGCTAACGGATTGAAAGAAGGCGACAACA 994 Query 734 TTAGTCTTTGGTCGTTTAGGTGTTGTGGAATCCTCTGCTTTGCCATGGAACAGAGTAGCT 793 ||||| |||||||||| |||||| ||||| |||| ||||||||||||||||||||||||| Sbjct 995 TTAGTGTTTGGTCGTTCAGGTGTCGTGGAGTCCTTTGCTTTGCCATGGAACAGAGTAGCT 1054 Query 794 CTTCCCTTGCTCTCTGTCTCTGCT 817 |||| ||||||||||||||||||| Sbjct 1055 CTTCTCTTGCTCTCTGTCTCTGCT 1078 Score = 145 bits (78), Expect = 8e-34 Identities = 227/290 (78%), Gaps = 46/290 (16%) Strand=Plus/Plus Query 1 GAAGCAGAAAGCCAGAAGAGAATCTTTTGTCTCTTCCCGAGAA-AAATAAGATCGTCTTT 59 |||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| Sbjct 133 GAAGAAGAAAGCCAGAAGAGAATATTTTGTCTCTTCCCGAGAAGAAA-AAGATCGTCTTT 191 Query 60 GGTGAAGAGACAACAAAACCTTAATGG-------A-CT-TCT-AC------ATCGCTTAT 103 |||||||||||||||||| |||||||| | || | | || ||||||||| Sbjct 192 GGTGAAGAGACAACAAAAGCTTAATGGTGGTTTTATCTCTTTTACTTCTTCATCGCTTAT 251 Query 104 CGATCTTAACCAGTTCCCTACTGATTCTGAGA--GA-GACG-A-AAACA-CT-A--C--A 152 ||||||||||||||| || ||||||||||||| || ||| | |||| || | | | Sbjct 252 CGATCTTAACCAGTTGCCGACTGATTCTGAGATCGAAGACCCACAAACCTCTGATTCCCA 311 Query 153 -A--AA--CCCTA----------GTTCTGAATCTTGTTCTTCACTCGTACTCTTTGATTA 197 | || ||||| |||||||| |||| |||||||||||||||||||||| Sbjct 312 GATGAAAACCCTACAAAACTCTAGTTCTGAACCTTGCACTTCACTCGTACTCTTTGATTA 371 Query 198 CAAGATGGCTGAGTCCGAGAAGACAGAGACGAAAGACCC-ACTAAACCCT 246 ||| | ||||||||||||||||| ||| ||||| |||| || ||||||| Sbjct 372 CAAAACGGCTGAGTCCGAGAAGATGGAGGCGAAA-ACCCTACAAAACCCT 420 > AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding protein | chr3:9171056-9172204 REVERSE LENGTH=1026 Length=1026 Score = 935 bits (506), Expect = 0.0 Identities = 630/688 (92%), Gaps = 15/688 (2%) Strand=Plus/Plus Query 145 ACACTACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGATTACAAGATG 204 |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| | Sbjct 337 ACACTACAAAACCCTAGTTCCGAACCTTGTTCTTCACTCGTACTCTTTGATTGCAAGACG 396 Query 205 GCTGAGTCCGAGAAGACAGAGACGAAAGA--C-CC--A--CTAA------A--CCCTCTG 249 |||| |||||||||||||||||||||||| | || | |||| | |||||| Sbjct 397 GCTGGGTCCGAGAAGACAGAGACGAAAGACCCACCAAACCCTAATTTCCCATGTCCTCTG 456 Query 250 TCTTTGGGCCTATCGGAGAACACAAGCCGCAAGAGACGTGCCGTAAAAGAGAGGAAGCGT 309 |||||| ||||| ||||||||| || ||||||||||||||| || || ||||||||||| Sbjct 457 TCTTTGTGCCTAACGGAGAACAAAAACCGCAAGAGACGTGCTGTGGAACAGAGGAAGCGT 516 Query 310 ACTGGTGGATTCAAGAAAGCAAAGGTTGCTCCTTTTCCACGGACAGCGAGAGAGACGCCT 369 ||||||||| |||||||||||||||||||||||||| ||| || ||||||||||||||| Sbjct 517 ACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTTTTCACAAACGGCGAGAGAGACGCCT 576 Query 370 GAGTGGCTTGTCAAGGTGATGAGTGACATGAAAGAAGCTAAAGACGCTAAACTGATCTTT 429 |||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||| Sbjct 577 GAGTGGCTTGTCAATGTGATGAGAGACATGAAAGAAGCCAAAGACGCTAAATTGATCTTT 636 Query 430 GAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTC 489 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 637 GAGAAGACTCTGTTCGTTACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTC 696 Query 490 AACAACTTACTCCGCAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAGACAAAGAC 549 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 697 AACAACTTACTCCGCAACGATTTCTTGACTTCTGTGGAGTCAAGAATCATAGACAAAGAC 756 Query 550 ATCAACAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTGAGAAG 609 ||||| |||||||||||||||||||||||||||||||| ||||||||||||| | ||||| Sbjct 757 ATCAAAAACGATAAGAAGATTGGAGTGGGAGCGATTCTTGTGGATCAACGGTGTAAGAAG 816 Query 610 TGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAAT 669 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 817 TGGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAAT 876 Query 670 TACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTGAAAGATGGCGAC 729 |||||| | || ||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 877 TACAATCTAATCTGTGGGTGGAACGATATTGTTGAGGCTAATGGATTGAAAGAAGGCGAC 936 Query 730 AACATTAGTCTTTGGTCGTTTAGGTGTTGTGGAATCCTCTGCTTTGCCATGGAACAGAGT 789 ||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| Sbjct 937 AACATTAGTCTTTGGTCATTCAGGTCCTGTGGAATCCTCTGCTTTGCCATGGAACAGAGA 996 Query 790 AGCTCTTCCCTTGCTCTCTGTCTCTGCT 817 ||| |||||||||||||||||||||||| Sbjct 997 AGCCCTTCCCTTGCTCTCTGTCTCTGCT 1024 Score = 176 bits (95), Expect = 3e-43 Identities = 124/137 (91%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 1 GAAGCAGAAAGC-CAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAATAAGATCGTCTTT 59 |||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 139 GAAGAAGAAA-CACAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAACAAGATCGTCTTT 197 Query 60 GGTGAAGAGACAACAAAACCTTA-ATGGACTTCTACATCGCTTATCGATCTTAACCAGTT 118 ||| |||||||||||||| ||| | | ||||| ||||||||||||||||||||||||| Sbjct 198 GGTAAAGAGACAACAAAAGCTTTCA-G--CTTCTTCATCGCTTATCGATCTTAACCAGTT 254 Query 119 CCCTACTGATTCTGAGA 135 |||| |||||||||||| Sbjct 255 CCCTTCTGATTCTGAGA 271 > AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) | chr5:8128353-8129402 REVERSE LENGTH=1050 Length=1050 Score = 902 bits (488), Expect = 0.0 Identities = 632/699 (90%), Gaps = 19/699 (3%) Strand=Plus/Plus Query 136 GAGACGAAAACACTACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGAT 195 ||||| |||||| |||||||||||||||| ||| ||||||||||||||| |||||||| | Sbjct 352 GAGACAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTTTGGT 411 Query 196 TACAAGATGGCTGAGT-CCGAGAAGACAGAGACGAAAGA--C-CC--A--CTAA--ACCC 245 |||||| |||||||| || | ||||| ||||||||||| | || | |||| ||| Sbjct 412 CACAAGACGGCTGAGTACC-AAAAGACGGAGACGAAAGACCCACCAAACCCTAATTTCCC 470 Query 246 ---T-C--TGTCTTTGGGCCT-ATCGGAGAACACAAGCCGCAAGAGACGTGCCGTAAAAG 298 | | |||||||| |||| || ||||||||||||||||||||||||||| || || Sbjct 471 ATGTACTATGTCTTTGTGCCTAAT-GGAGAACACAAGCCGCAAGAGACGTGCTGTGGAAC 529 Query 299 AGAGGAAGCGTACTGGTGGATTCAAGAAAGCAAAGGTTGCTCCTTTTCCACGGACAGCGA 358 | |||||||||| ||||||| ||||||||||||| |||||||||||| ||| || |||| Sbjct 530 AAAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAATGTTGCTCCTTTTTCACAAACGGCGA 589 Query 359 GAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGTGACATGAAAGAAGCTAAAGACGCTA 418 ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 590 GAGAGACACCTGAGTGGCTTGTCAAGGTGATGACAAACATGAAAGAAGCCAAAGACGCTA 649 Query 419 AACTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCT 478 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 650 AATTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACAAAGAACCGTCTCT 709 Query 479 CAATGCCTTTCAACAACTTACTCCGCAACGATTTCTTGACGTCTGTGGAGTCCAGAATCA 538 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| Sbjct 710 CAATGCCTTTCAACAACTTACTCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCA 769 Query 539 TAGACAAAGACATCAACAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAAC 598 || || |||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 770 TAAACGAAGACATCAACAACAATAACAAGATTGGAGTGGGAGCGATTCTCGTGGATCAAC 829 Query 599 GGTCTGAGAAGTGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAG 658 ||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 830 GGTGTAAAAAGTGGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAG 889 Query 659 GAAGCTGGAATTACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTGA 718 ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 890 GAAGCTGGAGTTACAATTTGATTTGTGGGTGGAACGACATCGTTGAGGCTAACAGATTGA 949 Query 719 AAGATGGCGACAACATTAGTCTTTGGTCGTTTAGGTGTTGTGGAATCCTCTGCTTTGCCA 778 |||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 950 AAGAAGGCGACAACATTACTCTTTGGTCGTTTAGGTGCTGTGGAATCCTCTGCTTTGCCA 1009 Query 779 TGGAACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCT 817 ||||||||||||||||||||||||||||||||||||||| Sbjct 1010 TGGAACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCT 1048 Score = 172 bits (93), Expect = 4e-42 Identities = 127/142 (89%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 1 GAAGCAGAAAGCCAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAATAAGATCGTCTTTG 60 |||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 148 GAAGAAGAATTCCAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAACAAGATCGTCTTTG 207 Query 61 GTGAAGAGACAACAAAACCTTAAT-GG------ACTTCTACATCGCTTATCGATCTTAAC 113 ||||||||||||||||| |||| | || |||||| |||||||||||||||||||| Sbjct 208 GTGAAGAGACAACAAAATCTTATTAGGGTTTCTACTTCTTCATCGCTTATCGATCTTAAC 267 Query 114 CAGTTCCCTACTGATTCTGAGA 135 ||||||||||| |||||||||| Sbjct 268 CAGTTCCCTACCGATTCTGAGA 289 > AT1G32030.1 | Symbols: | Domain of unknown function (DUF313) | chr1:11514594-11515595 FORWARD LENGTH=1002 Length=1002 Score = 220 bits (119), Expect = 1e-56 Identities = 341/444 (77%), Gaps = 31/444 (7%) Strand=Plus/Plus Query 321 CAAGAAAGCAAAGGTTGCTCCTT-TTCCACGGACAGCGAGAGAGACGCCTGAGTGGCTTG 379 |||||||||||| | |||||| || || ||| || ||||||| |||| |||||||| | Sbjct 516 CAAGAAAGCAAA-G--ACTCCTTATT-CATGGAAAGGGAGAGAGGCGCCGGAGTGGCTGG 571 Query 380 TCAAGGTGATGAGTG-AC-ATG-AAAGAAGCTAAAGACGCTAAACTGATCTTTGAGAAGA 436 ||||| ||||| | | || ||| | ||||| ||| | | | || |||| |||||||| Sbjct 572 TCAAGATGATG-G-GAACAATGCAGGGAAGC-GAAGGCCCGAGGCTAATCTATGAGAAGA 628 Query 437 CTCTGTTCGTGACTGATGT-AAACCCA-ACACAGAACCGTCTCTCAATGCCTTTCAACAA 494 ||||| || || ||||| ||| ||| | |||| |||||||| |||||||||||||| Sbjct 629 CTCTGACCGAAACAGATGTCAAA-CCAGTC-CAGAGCCGTCTCTTAATGCCTTTCAACAC 686 Query 495 CTTACTCCGCAACGA-TTTCTTGACGTCTGTGGAGTCCAGAATCATAGACAAAGACATCA 553 | || | || ||||| ||| |||||| |||| |||| |||||| | || ||| || Sbjct 687 CCTAATTCGTAACGACTTT-TTGACGCCTGTTGAGTTGAGAATCCT--AC-TAGA-AT-T 740 Query 554 ACAACGATAAGA-AGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTG-AGAAGTG 611 | || ||| | | || |||||| ||||||| ||| ||||||| | || | | ||||| Sbjct 741 AGAA-GATGACACGGA-TGGAGTTGGAGCGACTCTAGTGGATCCATGGGAGGTA-AAGTG 797 Query 612 GGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATTA 671 ||||||||| ||||||| | ||||||||||||| | ||||| |||||||||| ||| || Sbjct 798 GGGTGTGATTTTGAAGAAACGGGAGATGAAGAAATATTCAGGGAAAGGAAGCTTGAACTA 857 Query 672 CAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTG-AAAGATGGCGACA 730 | | | || || |||||||||||||||||||||||||||| |||| ||| | | ||| Sbjct 858 CGCTATAATATGCGGGTGGAACGATATCGTTGAGGCTAACGTATTGGAAAAA-GACGATG 916 Query 731 ACATTAGTCTTTGGTCGTTT-AGG 753 |||| ||| ||||||| ||| ||| Sbjct 917 ACATCAGTATTTGGTC-TTTCAGG 939 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39785444424 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5