BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480001
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) ... 983 0.0
AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding ... 935 0.0
AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) ... 902 0.0
AT1G32030.1 | Symbols: | Domain of unknown function (DUF313) ... 220 1e-56
> AT3G24850.1 | Symbols: | Domain of unknown function (DUF313)
| chr3:9071105-9072184 FORWARD LENGTH=1080
Length=1080
Score = 983 bits (532), Expect = 0.0
Identities = 634/684 (93%), Gaps = 4/684 (1%)
Strand=Plus/Plus
Query 136 GAGACGAAAACACTACAAAACCCTAGTTCTGAATC-TTGTTCTTCACTCGTACTCTTTGA 194
||| ||||||| ||||||||||||||||||||| | |||||| ||||||||||||| |||
Sbjct 397 GAGGCGAAAACCCTACAAAACCCTAGTTCTGAA-CTTTGTTCATCACTCGTACTCTCTGA 455
Query 195 TTACAAGATGGCTGAGTCCGAGAAGACAGAGACGAAAGACCCACTAAACCCTCTGTCTTT 254
|||||||||||||||||| || |||| |||||||||||||||| |||||||||||||||
Sbjct 456 TTACAAGATGGCTGAGTCGGAAAAGATGGAGACGAAAGACCCACCAAACCCTCTGTCTTT 515
Query 255 GGGCCTATCGGAGAACACAAGCCGCAAGAGACGTGCCGTAAAAGAGAGGAAGCGTACTGG 314
| ||||| ||| |||||||||||||||||||||||| || |||||||||| ||||| ||
Sbjct 516 GTGCCTAACGGGGAACACAAGCCGCAAGAGACGTGCTGTGGAAGAGAGGAAACGTACCGG 575
Query 315 TGGATTCAAGAAAGCAAAGGTTGCTCCTTTTCCACGGACAGCGAGAGAGACGCCTGAGTG 374
|||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||
Sbjct 576 TGGATTCAAGAAGGCAAAGGTTGCTCCTTTTCCAGGGACAGCGAGAGATACGCCTAAGTG 635
Query 375 GCTTGTCAAGGTGATGAGTGACATGAAAGAAGCTAAAGACGCTAAACTGATCTTTGAGAA 434
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 636 GCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGATGCTAAACTGATCTTTGAGAA 695
Query 435 GACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTCAACAA 494
||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 696 GACTCTGTTTGTGACTGATATAAACCCAACACAGAACCGTCTCTCAATGCCGTTCAACAA 755
Query 495 CTTACTCCGCAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAGACAAAGACATCAA 554
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 756 CTTACTCCAAAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAAAGGAAGACATCAA 815
Query 555 CAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTG-AGAAGTGGG 613
|||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 816 CAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTGTA-AAGTGGG 874
Query 614 GTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATTACA 673
||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 875 GTGTGATGTTGAAAAGATGGGAGCTGAAGAAGGAATCAGGAAAAGGAAGCTGGAACTACA 934
Query 674 ATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTGAAAGATGGCGACAACA 733
|| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 935 ATCTGATTTGTGGGTGGAACGATGTCGTTGAGGCTAACGGATTGAAAGAAGGCGACAACA 994
Query 734 TTAGTCTTTGGTCGTTTAGGTGTTGTGGAATCCTCTGCTTTGCCATGGAACAGAGTAGCT 793
||||| |||||||||| |||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 995 TTAGTGTTTGGTCGTTCAGGTGTCGTGGAGTCCTTTGCTTTGCCATGGAACAGAGTAGCT 1054
Query 794 CTTCCCTTGCTCTCTGTCTCTGCT 817
|||| |||||||||||||||||||
Sbjct 1055 CTTCTCTTGCTCTCTGTCTCTGCT 1078
Score = 145 bits (78), Expect = 8e-34
Identities = 227/290 (78%), Gaps = 46/290 (16%)
Strand=Plus/Plus
Query 1 GAAGCAGAAAGCCAGAAGAGAATCTTTTGTCTCTTCCCGAGAA-AAATAAGATCGTCTTT 59
|||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct 133 GAAGAAGAAAGCCAGAAGAGAATATTTTGTCTCTTCCCGAGAAGAAA-AAGATCGTCTTT 191
Query 60 GGTGAAGAGACAACAAAACCTTAATGG-------A-CT-TCT-AC------ATCGCTTAT 103
|||||||||||||||||| |||||||| | || | | || |||||||||
Sbjct 192 GGTGAAGAGACAACAAAAGCTTAATGGTGGTTTTATCTCTTTTACTTCTTCATCGCTTAT 251
Query 104 CGATCTTAACCAGTTCCCTACTGATTCTGAGA--GA-GACG-A-AAACA-CT-A--C--A 152
||||||||||||||| || ||||||||||||| || ||| | |||| || | | |
Sbjct 252 CGATCTTAACCAGTTGCCGACTGATTCTGAGATCGAAGACCCACAAACCTCTGATTCCCA 311
Query 153 -A--AA--CCCTA----------GTTCTGAATCTTGTTCTTCACTCGTACTCTTTGATTA 197
| || ||||| |||||||| |||| ||||||||||||||||||||||
Sbjct 312 GATGAAAACCCTACAAAACTCTAGTTCTGAACCTTGCACTTCACTCGTACTCTTTGATTA 371
Query 198 CAAGATGGCTGAGTCCGAGAAGACAGAGACGAAAGACCC-ACTAAACCCT 246
||| | ||||||||||||||||| ||| ||||| |||| || |||||||
Sbjct 372 CAAAACGGCTGAGTCCGAGAAGATGGAGGCGAAA-ACCCTACAAAACCCT 420
> AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding
protein | chr3:9171056-9172204 REVERSE LENGTH=1026
Length=1026
Score = 935 bits (506), Expect = 0.0
Identities = 630/688 (92%), Gaps = 15/688 (2%)
Strand=Plus/Plus
Query 145 ACACTACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGATTACAAGATG 204
|||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |
Sbjct 337 ACACTACAAAACCCTAGTTCCGAACCTTGTTCTTCACTCGTACTCTTTGATTGCAAGACG 396
Query 205 GCTGAGTCCGAGAAGACAGAGACGAAAGA--C-CC--A--CTAA------A--CCCTCTG 249
|||| |||||||||||||||||||||||| | || | |||| | ||||||
Sbjct 397 GCTGGGTCCGAGAAGACAGAGACGAAAGACCCACCAAACCCTAATTTCCCATGTCCTCTG 456
Query 250 TCTTTGGGCCTATCGGAGAACACAAGCCGCAAGAGACGTGCCGTAAAAGAGAGGAAGCGT 309
|||||| ||||| ||||||||| || ||||||||||||||| || || |||||||||||
Sbjct 457 TCTTTGTGCCTAACGGAGAACAAAAACCGCAAGAGACGTGCTGTGGAACAGAGGAAGCGT 516
Query 310 ACTGGTGGATTCAAGAAAGCAAAGGTTGCTCCTTTTCCACGGACAGCGAGAGAGACGCCT 369
||||||||| |||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 517 ACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTTTTCACAAACGGCGAGAGAGACGCCT 576
Query 370 GAGTGGCTTGTCAAGGTGATGAGTGACATGAAAGAAGCTAAAGACGCTAAACTGATCTTT 429
|||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct 577 GAGTGGCTTGTCAATGTGATGAGAGACATGAAAGAAGCCAAAGACGCTAAATTGATCTTT 636
Query 430 GAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTC 489
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GAGAAGACTCTGTTCGTTACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTC 696
Query 490 AACAACTTACTCCGCAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAGACAAAGAC 549
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 697 AACAACTTACTCCGCAACGATTTCTTGACTTCTGTGGAGTCAAGAATCATAGACAAAGAC 756
Query 550 ATCAACAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTGAGAAG 609
||||| |||||||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 757 ATCAAAAACGATAAGAAGATTGGAGTGGGAGCGATTCTTGTGGATCAACGGTGTAAGAAG 816
Query 610 TGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAAT 669
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TGGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAAT 876
Query 670 TACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTGAAAGATGGCGAC 729
|||||| | || ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 877 TACAATCTAATCTGTGGGTGGAACGATATTGTTGAGGCTAATGGATTGAAAGAAGGCGAC 936
Query 730 AACATTAGTCTTTGGTCGTTTAGGTGTTGTGGAATCCTCTGCTTTGCCATGGAACAGAGT 789
||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 937 AACATTAGTCTTTGGTCATTCAGGTCCTGTGGAATCCTCTGCTTTGCCATGGAACAGAGA 996
Query 790 AGCTCTTCCCTTGCTCTCTGTCTCTGCT 817
||| ||||||||||||||||||||||||
Sbjct 997 AGCCCTTCCCTTGCTCTCTGTCTCTGCT 1024
Score = 176 bits (95), Expect = 3e-43
Identities = 124/137 (91%), Gaps = 6/137 (4%)
Strand=Plus/Plus
Query 1 GAAGCAGAAAGC-CAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAATAAGATCGTCTTT 59
|||| ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 139 GAAGAAGAAA-CACAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAACAAGATCGTCTTT 197
Query 60 GGTGAAGAGACAACAAAACCTTA-ATGGACTTCTACATCGCTTATCGATCTTAACCAGTT 118
||| |||||||||||||| ||| | | ||||| |||||||||||||||||||||||||
Sbjct 198 GGTAAAGAGACAACAAAAGCTTTCA-G--CTTCTTCATCGCTTATCGATCTTAACCAGTT 254
Query 119 CCCTACTGATTCTGAGA 135
|||| ||||||||||||
Sbjct 255 CCCTTCTGATTCTGAGA 271
> AT5G24050.1 | Symbols: | Domain of unknown function (DUF313)
| chr5:8128353-8129402 REVERSE LENGTH=1050
Length=1050
Score = 902 bits (488), Expect = 0.0
Identities = 632/699 (90%), Gaps = 19/699 (3%)
Strand=Plus/Plus
Query 136 GAGACGAAAACACTACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGAT 195
||||| |||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |
Sbjct 352 GAGACAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTTTGGT 411
Query 196 TACAAGATGGCTGAGT-CCGAGAAGACAGAGACGAAAGA--C-CC--A--CTAA--ACCC 245
|||||| |||||||| || | ||||| ||||||||||| | || | |||| |||
Sbjct 412 CACAAGACGGCTGAGTACC-AAAAGACGGAGACGAAAGACCCACCAAACCCTAATTTCCC 470
Query 246 ---T-C--TGTCTTTGGGCCT-ATCGGAGAACACAAGCCGCAAGAGACGTGCCGTAAAAG 298
| | |||||||| |||| || ||||||||||||||||||||||||||| || ||
Sbjct 471 ATGTACTATGTCTTTGTGCCTAAT-GGAGAACACAAGCCGCAAGAGACGTGCTGTGGAAC 529
Query 299 AGAGGAAGCGTACTGGTGGATTCAAGAAAGCAAAGGTTGCTCCTTTTCCACGGACAGCGA 358
| |||||||||| ||||||| ||||||||||||| |||||||||||| ||| || ||||
Sbjct 530 AAAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAATGTTGCTCCTTTTTCACAAACGGCGA 589
Query 359 GAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGTGACATGAAAGAAGCTAAAGACGCTA 418
||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 590 GAGAGACACCTGAGTGGCTTGTCAAGGTGATGACAAACATGAAAGAAGCCAAAGACGCTA 649
Query 419 AACTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCT 478
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 650 AATTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACAAAGAACCGTCTCT 709
Query 479 CAATGCCTTTCAACAACTTACTCCGCAACGATTTCTTGACGTCTGTGGAGTCCAGAATCA 538
||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 710 CAATGCCTTTCAACAACTTACTCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCA 769
Query 539 TAGACAAAGACATCAACAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAAC 598
|| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 770 TAAACGAAGACATCAACAACAATAACAAGATTGGAGTGGGAGCGATTCTCGTGGATCAAC 829
Query 599 GGTCTGAGAAGTGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAG 658
||| | | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 830 GGTGTAAAAAGTGGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAG 889
Query 659 GAAGCTGGAATTACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTGA 718
||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 890 GAAGCTGGAGTTACAATTTGATTTGTGGGTGGAACGACATCGTTGAGGCTAACAGATTGA 949
Query 719 AAGATGGCGACAACATTAGTCTTTGGTCGTTTAGGTGTTGTGGAATCCTCTGCTTTGCCA 778
|||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 950 AAGAAGGCGACAACATTACTCTTTGGTCGTTTAGGTGCTGTGGAATCCTCTGCTTTGCCA 1009
Query 779 TGGAACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCT 817
|||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TGGAACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCT 1048
Score = 172 bits (93), Expect = 4e-42
Identities = 127/142 (89%), Gaps = 7/142 (5%)
Strand=Plus/Plus
Query 1 GAAGCAGAAAGCCAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAATAAGATCGTCTTTG 60
|||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 148 GAAGAAGAATTCCAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAACAAGATCGTCTTTG 207
Query 61 GTGAAGAGACAACAAAACCTTAAT-GG------ACTTCTACATCGCTTATCGATCTTAAC 113
||||||||||||||||| |||| | || |||||| ||||||||||||||||||||
Sbjct 208 GTGAAGAGACAACAAAATCTTATTAGGGTTTCTACTTCTTCATCGCTTATCGATCTTAAC 267
Query 114 CAGTTCCCTACTGATTCTGAGA 135
||||||||||| ||||||||||
Sbjct 268 CAGTTCCCTACCGATTCTGAGA 289
> AT1G32030.1 | Symbols: | Domain of unknown function (DUF313)
| chr1:11514594-11515595 FORWARD LENGTH=1002
Length=1002
Score = 220 bits (119), Expect = 1e-56
Identities = 341/444 (77%), Gaps = 31/444 (7%)
Strand=Plus/Plus
Query 321 CAAGAAAGCAAAGGTTGCTCCTT-TTCCACGGACAGCGAGAGAGACGCCTGAGTGGCTTG 379
|||||||||||| | |||||| || || ||| || ||||||| |||| |||||||| |
Sbjct 516 CAAGAAAGCAAA-G--ACTCCTTATT-CATGGAAAGGGAGAGAGGCGCCGGAGTGGCTGG 571
Query 380 TCAAGGTGATGAGTG-AC-ATG-AAAGAAGCTAAAGACGCTAAACTGATCTTTGAGAAGA 436
||||| ||||| | | || ||| | ||||| ||| | | | || |||| ||||||||
Sbjct 572 TCAAGATGATG-G-GAACAATGCAGGGAAGC-GAAGGCCCGAGGCTAATCTATGAGAAGA 628
Query 437 CTCTGTTCGTGACTGATGT-AAACCCA-ACACAGAACCGTCTCTCAATGCCTTTCAACAA 494
||||| || || ||||| ||| ||| | |||| |||||||| ||||||||||||||
Sbjct 629 CTCTGACCGAAACAGATGTCAAA-CCAGTC-CAGAGCCGTCTCTTAATGCCTTTCAACAC 686
Query 495 CTTACTCCGCAACGA-TTTCTTGACGTCTGTGGAGTCCAGAATCATAGACAAAGACATCA 553
| || | || ||||| ||| |||||| |||| |||| |||||| | || ||| ||
Sbjct 687 CCTAATTCGTAACGACTTT-TTGACGCCTGTTGAGTTGAGAATCCT--AC-TAGA-AT-T 740
Query 554 ACAACGATAAGA-AGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTG-AGAAGTG 611
| || ||| | | || |||||| ||||||| ||| ||||||| | || | | |||||
Sbjct 741 AGAA-GATGACACGGA-TGGAGTTGGAGCGACTCTAGTGGATCCATGGGAGGTA-AAGTG 797
Query 612 GGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATTA 671
||||||||| ||||||| | ||||||||||||| | ||||| |||||||||| ||| ||
Sbjct 798 GGGTGTGATTTTGAAGAAACGGGAGATGAAGAAATATTCAGGGAAAGGAAGCTTGAACTA 857
Query 672 CAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTG-AAAGATGGCGACA 730
| | | || || |||||||||||||||||||||||||||| |||| ||| | | |||
Sbjct 858 CGCTATAATATGCGGGTGGAACGATATCGTTGAGGCTAACGTATTGGAAAAA-GACGATG 916
Query 731 ACATTAGTCTTTGGTCGTTT-AGG 753
|||| ||| ||||||| ||| |||
Sbjct 917 ACATCAGTATTTGGTC-TTTCAGG 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5