BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480002
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24840.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 2959 0.0
> AT3G24840.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr3:9066840-9070626 FORWARD LENGTH=2260
Length=2260
Score = 2959 bits (1602), Expect = 0.0
Identities = 1823/1927 (95%), Gaps = 25/1927 (1%)
Strand=Plus/Plus
Query 1 GTTTTACATTATTATCATCTGTTTC-TTGATTAAAAACAAATGCCAGCGTTAGGTGAGAT 59
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||
Sbjct 215 GTTTTACATTATTATCATCTGTTTCTTTGA-TAAAAACAAATGCCAGCATTAGGTGAGAT 273
Query 60 ACTTTTGGTTCCAGAAACTGATAAAGGAAAGAGTAAAG---ACATTGAGGTTTCAGATGA 116
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 274 ACTTTTGGTTCCAGAAACTGATAAAGGAAAGAGTAAAGATTACATTGAGGTTTCAGAGGA 333
Query 117 TGAAAAGATTACAAGAACTCGTTCTAGATCTTTAAAGAAGAAAGCTATTAAAGCTTCGAG 176
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 TGAGAAGATTACAAGAACTCGTTCTAGATCTTTAAAGAAGAAAGCTATTAAAGCTTCGAA 393
Query 177 TAAATTGACACATAGTTTAAGGAAACGAGGGAAGCGTGTAGCTGATCAATATGCACCAAT 236
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 394 TAAATTGACACATAGTTTAAGGAAAAGAGGGAAGCGTGTCGCTGATCAATATGCACCAAT 453
Query 237 TGTGATTGAGGATGTGAGGGATGAAGAAGAGGAGAAAGCAGTGAATGTATTTAGAAAAGC 296
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TGTGATTGAGGATGTGAGAGATGAAGAAGAGGAGAAAGCAGTGAATGTATTTAGAAAAGC 513
Query 297 TTTGGTTTCTTTAGATTTGCTTCCACCTCGGCACGATGAGTATCATACAATGTTGAGATT 356
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 514 TTTGGTTTCTTTAGATTTGCTTCCACCACGGCACGATGATTATCATACCATGTTGAGATT 573
Query 357 CTTGAAGGCGAGGAGATTTGATCTTGACAAAACTGTTCAGATGTGGGAAGAAATGTTAAA 416
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 574 CTTGAAGGCGAGGAGGTTTGATCTTGAGAAAACAGTTCAGATGTGGGAAGAAATGTTAAA 633
Query 417 GTGGAGGAAAGAGAATGGAGTTGATACTATAATGCAGGATTTTGTTTATGATGAATATGA 476
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 634 GTGGAGGAAAGAGAATGGAGTTGATACTATAATACAGGATTTTGTTTATGATGAATATGA 693
Query 477 AGAAGTACAACAATACTATCCACATGGTTATCATGGTGTAGATAGAGAGGGACGACCTGT 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 694 AGAAGTACAACAATACTATCCACATGGTTATCATGGTGTAGATAGAGAGGGACGGCCTGT 753
Query 537 TTACATTGAACGGCTTGGTAAAATTGACCCCGGCAAGCTAATGAAGGTTACCACATTGGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TTACATTGAACGGCTTGGTAAAATTGACCCCGGCAAGCTAATGAAGGTTACCACATTGGA 813
Query 597 GCGTTTCTTGAGATATCATGTACAGGGTTTTGAAAAGACTTTTTCGGAGAAGTTTCCAGC 656
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 814 GCGGTTCTTGAGATATCATGTACAGGGTTTTGAAAAGACTTTTTCTGAGAAGTTTCCAGC 873
Query 657 CTGTTCGATCGCAGCAAAGAGGCACATAAATTCTTCGACAACCATAATAGATGTGCATGG 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TTGTTCGATCGCAGCAAAGAGGCACATAAATTCTTCGACAACCATAATAGATGTGCATGG 933
Query 717 AGTGAGTTGGATGAGCTTTAGAAAATTAGCTCAGGACCTTGTAATGCGAATGCAAAAAAT 776
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 934 AGTGAGCTGGATGAGCTTTAGAAAATTAGCTCAGGACCTTGTAATGCGAATGCAGAAAAT 993
Query 777 TGATGGTGACAACTATCCTGAGACATTGAATCAGATGTACATTATTAATGCTGGAAACGG 836
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 TGACGGTGACAACTATCCTGAGACATTGAATCAGATGTACATTATTAATGCTGGAAACGG 1053
Query 837 ATTCAAGCTTGTTTGGAACACCGTGAAAGGCTTTCTCGACCCGAAAACTACTTCTAAGAT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 ATTCAAGCTTGTTTGGAACACCGTGAAAGGCTTTCTCGACCCGAAAACTACTTCTAAGAT 1113
Query 897 ACATGTTTTGGGAAACAAATATCGCAGTCACCTTCTTGAGATTATAGATCCAAGTGAGCT 956
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1114 ACATGTTTTGGGAAACAAATATCGCAGTCACCTTCTTGAAATTATAGATCCAAGTGAGCT 1173
Query 957 TCCAGAGTTTATGGGAGGAAATTGTACCTGTGCAAATGAAGGTGGGTGTATGCGATTCAA 1016
||| |||||| |||| |||||||| | |||||| |||||||||||||||||||||||||
Sbjct 1174 TCCTGAGTTTCTGGGTGGAAATTGCAAGTGTGCACATGAAGGTGGGTGTATGCGATTCAA 1233
Query 1017 CAAGGGGCCTTGGAATGACCCGGAGATAATGAAACTAGTGCGCTCGAGAGATGCAATGTA 1076
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 CAAGGGGCCTTGGAACGACCCGGAGATAATGAAACTAGTGCGCTCGAGAGATGCAATGTA 1293
Query 1077 CAAAACAAAAGCAATAGGGCTCCTGGAGAACGGGGAAGTAGCTAAATTATTTGCGTTACC 1136
|||| |||||| ||| ||||| |||||||| ||||||||||||||||||||| | ||||
Sbjct 1294 CAAACCAAAAGAAATGGGGCTTCTGGAGAATGGGGAAGTAGCTAAATTATTTTCCTTACG 1353
Query 1137 GCATGTGAACACAGAGATGTCATCACCTGATGGAGGCCAAGTTAGGGAGAGAGAGTCACA 1196
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1354 GCATGTGAACACAGATATGTCATCACCTGATGGAGGCCATGTTAGGGAGAGAGAATCGCA 1413
Query 1197 TTCTGAACAGGACAAACGCGCTCAGCTGAGCAATCAAGCTGAAGCAGTTGGTGTTGGGAG 1256
| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 TCCTGAACATGACAAACGTGCTCAGCTGAGCAATCAAGCTGAAGCAGTTGGTGTTGGGAG 1473
Query 1257 AATGGAACAGTCTGATTCAACAAATCCATTACCGAATAATCTGACAGTAGAAAGGAGTTT 1316
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1474 AATGGAACAGTCTGATTCAACAAGTCCATTACCGAATAATCTGGCAGTAGAAAGGAGTTT 1533
Query 1317 AAAGACCTCTCTTCAGAAAGTTGCAAGTTTGTTGGCTCGGTTTATCGTCCAACTTCTTGG 1376
|| ||||||||||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct 1534 AACGACCTCTCTTCAGAAAGTTGCAAGTTTTTTGGCCCGTTTTATCCTCCAACTTCTTGG 1593
Query 1377 CAGTCTATTTCTCATGTTCCGGATCTTGGGAAGACTTGTAAATAAGCAACCAGAGAACCA 1436
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 CAGTCTATGTCTCATGTTCCGGATCTTGGGAAGACTTGTAAATAAGCAACCAGAGAACCA 1653
Query 1437 ATTGAGACCGGAGTTAAGGGTTTCGGTCTCCCAGCAACAAGTTCCTCCTCCTCAGGTGCA 1496
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 1654 ATTGAGACCGGAGTTAAGTGTTTCAGTCTCCCAGCAACAAGTTCCTCCTCCTCAGGT-C- 1711
Query 1497 AAGAGAGTCTGTCCATCCATGTTGGCTGAGGTTGCAAAATCTAGAGACCATGGTCACAGT 1556
| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1712 --------C-----ATCCATGTTGGCTGAGGTTGCAAAATCTGGAGACCATGGTCACAGT 1758
Query 1557 TTTATGTGATAAACCCTCAAGCATTCCTCAAGATAAAGAAGATATACTTCGTGATTCATT 1616
||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1759 TTTGTGTGATAAACCCTCAAGTATTCCTCAGGAAAAAGAAGATATACTTCGTGATTCATT 1818
Query 1617 AGACCGCATCAAATCCATTGAGCAAGATTTACAGAAGACAAAGAAGGCGCTCTTTTTGAC 1676
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1819 AGACCGTATCAAATCCATTGAGCAAGATTTGCAGAAGACAAAGAAGGCGCTCTTTTTGAC 1878
Query 1677 CGCGTCAAAACAAATAGAACTCGCTGAGTGTTTGGAAAACTTAAAGGAAAGCAGCTCAAC 1736
||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct 1879 CGCGTCAAAACAAATAGAACTCGCTGAGTGTTTCGAAAACTTGAAGGAGAGCAGTTCAAC 1938
Query 1737 GGGAATGCGTTCATGCTGGCCAAGACACTGCAGAAACTTCCAAGCAGACACCTAATTTGC 1796
||||||||| ||||||||||||||||||||||||||||| ||||| || |||| ||||||
Sbjct 1939 GGGAATGCGATCATGCTGGCCAAGACACTGCAGAAACTTTCAAGCTGAAACCTGATTTGC 1998
Query 1797 AGAATAAATGTATCTTCGGATCTCATATTCGAAGTCTGCATAGCTACTAATTCACCCTCC 1856
||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 1999 AGAATAAATTTATCTTCGGATCTCATATCCGAAGTCTGCATAGCTACTACTTCACCCACT 2058
Query 1857 -AACCtttttttCAGATGGTATATAT-TA-AA-GGCAAAATGGTAACAGGAAGTGAAATT 1912
|||| | || |||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 2059 TAACCATATTA-CAGATGGTATATATATATAAAGGCAAAATGGTAACAGGAAGTGAAATT 2117
Query 1913 GAAGAGG 1919
|||||||
Sbjct 2118 GAAGAGG 2124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95029631685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5