BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480003
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24860.1 | Symbols: | Homeodomain-like superfamily protein ... 1456 0.0
> AT3G24860.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:9073623-9074682 FORWARD LENGTH=1060
Length=1060
Score = 1456 bits (788), Expect = 0.0
Identities = 962/1042 (92%), Gaps = 27/1042 (3%)
Strand=Plus/Plus
Query 1 AACATTATTCCACTAAACCATGACGACGCCTTCGCCGACCTCCTCTCCTCCCTCTGATTC 60
|||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AACATTGTTACACTAAACCATGGCGACGCCTTCGCCGACCTCCTCTCCTCCCTCTGATTC 60
Query 61 AAACCCTAATTCCGTCGCTACTCCGCCGCATCACAAACAACAACCACCCTCTCCTCCTCC 120
|||||||||||| | |||||||||||||||| || | |||||||||||||||||||||
Sbjct 61 AAACCCTAATTCTGCCGCTACTCCGCCGCAT--CAGA-AACAACCACCCTCTCCTCCTCA 117
Query 121 ACCCACGGATCCATCCTCTCCACCACCACAAATCACCGTCGTAGCTTTAGCCGCATCAAC 180
||||||| ||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 118 ACCCACGAATCCATCCTCTCCACCACCGCACACCACCGTCGTAGCTTTAGCCGCATCAAC 177
Query 181 CTCCGCCGTCGCCAGAAAAACCCAACCAGTTCTCTGGACTCACGACGAGACTCTCCTCTT 240
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 178 CTCCGCCGTCGCCAGAAAAACCCAACCTGTTCTCTGGACTCAAGACGAGACCCTCCTCTT 237
Query 241 AATCGAATCCTACAAAGAGAAATGGTACGCAATTGGTCGCGGTCCTCTAAAATCAACTCA 300
||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 238 AATCGAATCATACAAAGAGAAATGGTTCGCAATTGGTCGTGGTCCTCTAAAATCAACTCA 297
Query 301 CTGGGAAGACATCGCCGTCGCTGTCTCATCTCGTTCCGGCGTTGAACGGTCATCTACACA 360
||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||||||
Sbjct 298 CTGGGAAGAGATCGCCGTTGCTGCCTCATCTCGTTCCGGCGTTGAACGGACATCTACACA 357
Query 361 GTGTAGGCATAAGATCGAGAAGATGCGTAAAAGATTCCGATCTGAGAGACAGAGTATGGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTGTAGGCATAAGATCGAGAAGATGCGTAAAAGATTCCGATCTGAGAGACAGAGTATGGG 417
Query 421 ACCTATCTCAATTTGGCCTTTCTATAATCAAATGGAGGAATTGGATTC---AAATCCTGC 477
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 ACCTATCTCAATTTGGCCTTTCTATAATCAAATGGAGGAATTGGATTCTTCAAATCCTGC 477
Query 478 TCCGATCTCTGCTCGTCCTCTCACTCGTCTTCCTCCTAATTCGAATAATC---AC-TA-- 531
||||||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 478 TCCGATCTCAGCTCGTCCTCTCACTCGTCTTCCTCCTAATTCGAATAATCGCTACGTAGA 537
Query 532 C-A--aagacgacgatgacgaagacgatga---taactacgaagaagaagaggacgaaga 585
| | |||| || ||||| ||||| ||| | ||||||||||||||| || || |||||
Sbjct 538 CGACGAAGAAGAAGATGAAGAAGAGGATAACAATAACTACGAAGAAGAGGAAGAAGAAGA 597
Query 586 tgagagacagagCAAATCGAGAAGTATTAATTACATATTGAGAAGACCTGGAACTGTTAA 645
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGAGAGACAGAGCAAATCGAGGAGTATTAATTACATATTGAGAAGACCTGGAACTGTTAA 657
Query 646 CAGATTTGCTGGAGTTGGTGGAGGATTGTTGTCATGGGGACAAAAAGAGAGATCATCAAA 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 CAGATTTGCTGGAGTTGGTGGAGGATTGTTGTCATGGGGACAAAAAGAGAGATCATCGAA 717
Query 706 GAGGAAGAGGAACGACGGAGACGGCGGCGAGAGGCGGAGGAAAGGA--GCGAAAGCGGTT 763
||||||||||||||| |||||||| || |||||||||||||||||| |||| || |||
Sbjct 718 GAGGAAGAGGAACGATGGAGACGGTGGTGAGAGGCGGAGGAAAGGAATGCGA--GCCGTT 775
Query 764 GCGGCAGAGATTAGGGCGTTTGCTGAGAGAGTAATGGTAATGGAGAAGAAGAAGATTGAG 823
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GCAGCGGAGATTAGGGCGTTTGCTGAGAGAGTAATGGTAATGGAGAAGAAGAAGATTGAG 835
Query 824 TTTGTTAAAGAGACAGTGAGGCTTCGTAAAGAGATGGAGATTCGAAGAAGCAATTTGATT 883
|||| ||||||||| ||||| |||||||| || ||||||||||| |||| ||||||||||
Sbjct 836 TTTGCTAAAGAGACTGTGAGACTTCGTAAGGAAATGGAGATTCGTAGAATCAATTTGATT 895
Query 884 CAGAGTTCACAAACTCAGCTTCTTGAATTTATCAACAATGCTTTTGATTCTTTCTAACGC 943
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 896 CAGAGTTCTCAAACTCAGCTTCTTCAATTTATCAACAATGCTTTTGATTCTTTCTAACGT 955
Query 944 AGAGATT-AGTGTCATTGTTGGTTTTAGATTTGTAACATAGGTAATGAATT-GAAGAA-T 1000
||||||| ||| |||||||| ||||||||||||||||||||||| | ||| |||||| |
Sbjct 956 AGAGATTTAGT--CATTGTTGCTTTTAGATTTGTAACATAGGTAACGGATTTGAAGAAAT 1013
Query 1001 GCACTGTGTAAGGTAATGTTTA 1022
||||| |||||| |||||||||
Sbjct 1014 GCACTATGTAAGCTAATGTTTA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5