BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480010
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25030.1 | Symbols: | RING/U-box superfamily protein | chr3... 1555 0.0
> AT3G25030.1 | Symbols: | RING/U-box superfamily protein | chr3:9122197-9123502
FORWARD LENGTH=1115
Length=1115
Score = 1555 bits (842), Expect = 0.0
Identities = 922/960 (96%), Gaps = 7/960 (1%)
Strand=Plus/Plus
Query 1 ATAAAGTATATTCTATTCATTACAGATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 ATAAAGTATATTCTATTCATTACAGATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGT 214
Query 61 GAAGACTAAGTTCACATTCTAATTATTTGTGCTTTGAATCGGTGAAAGATGATTCAAATG 120
||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 215 AAAGACGAAGTTCACATTCTCATTGTTTGTGCTTTGAATCGGTGAAAGATGATTCAAATG 274
Query 121 GACGGTGGTGATAGGCTAAGAGTGACTTTATTAGATCGTATGTCAACGGTGGAGACTAGC 180
|| ||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 275 GATGGTGGAGATAGGCTGAGAGTGACTTTATTAGATCGTATGTCAACGGTTGAGAGTAGC 334
Query 181 CGGAGCTGTTTAACTCTTGAAGCTATTCTAATGGCTGATAAAAACAGAACCTCGCCGCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CGGAGCTGTTTAACTCTTGAAGCTATTCTAATGGCTGATAAAAACAGAACCTCGCCGCAG 394
Query 241 ATTCTCTCACCACCACCGTCGAGGAACCAATCTAACCGGTCACTTCTTGAAGTAATGCAA 300
|||||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||||||
Sbjct 395 ATTCTCTCACCACCGCCGTCGAGGAGCCAATCTAACCGGTCACTTGTTGAAGTCATGCAA 454
Query 301 AGAGAGCACCGACACAGTCGAGACAAAACCGCTTGGAAAAGTCTCCGTGAAAAGCTCCGT 360
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 455 AGAGAGCACCGACACAGTAGAGATAAAACCGCTTGGAAAAGTCTCCGTGAAAAGCTCCGT 514
Query 361 CTTAAACGTAACGCTACTGTTTGGATCTCGTCTAATTCTATCCCGAGTTTGGATACGCCT 420
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 CTTAAACGTAACGGTTCTGTTTGGATCTCGTCTAATTCTATCCCGAGTTTGGATACGCCT 574
Query 421 ATTCCTAACCGGGATAACGTTAGCCACCAACTTGGTTTCCTCCTTTCCAACTC---AAAC 477
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 575 ATTCCTAACCGGGATAACGTTAGCCACCAACTTGGTTTCCTCCTTTCTAACTCTGGAAAT 634
Query 478 ATAACAGAGGAAGCTTCTTCGGCGGAGGGAAGGATTCGGTTAGGAGCTGTGTTGGCAGAG 537
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 635 GTAACAGAGGAAGCTTCGTCGGTGGAGGGAAGGATTCGGTTAGGAGCTGTGTTGGCAGAG 694
Query 538 GAGAGAGCATTATCGGCTAGAGAAGAGGAAACGCCGGCGGAGAGGGAAGTGGAGCCGGCG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GAGAGAGCATTATCGGCTAGAGAAGAGGAAACGCCGGCGGAGAGGGAAGTGGAGCCGGCG 754
Query 598 AGGATGTCTTTGATGGAGTTGTTGGAAGAGAATGAAGGGCAAATGAGTTTGGTAAGTGTT 657
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 755 AGGATGTCATTGATGGAGTTGTTGGAAGAGAATGAAGGGCAAATGAGTTTTGTAAGTGTC 814
Query 658 GACGGAGAGGCGGAGGAGGAGGTGGCGGTGACGGTGACGGCGGCGGAGATAAGTTGTTGT 717
|||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct 815 GACGGAGAGGCGGAGGAGGAGGTGGC-G-G-CAGTGACGGCGGCGGAGATAAGTTGTTGT 871
Query 718 GTGTGTATGGTTAGAAGCAAAGGAGCTGCGTTTATTCCGTGTGGTCATACGTTTTGTAGG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 GTGTGTATGGTTAGAAGCAAAGGAGCTGCGTTTATTCCGTGTGGTCATACGTTTTGTAGG 931
Query 778 TTGTGTTCTAGAGAGCTTTGGGTTCAAAGAGGAAACTGTCCTCTCTGTAATACTACAATT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 932 TTGTGTTCTAGAGAGCTTTGGGTTCAAAGAGGAAACTGTCCTCTCTGTAATACCACAATT 991
Query 838 TTAGAAGTTCTTGATCTTTTTTAGACTTTTCAGTTTAATTATCTTAATTTATCATAATCA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TTAGAAGTTCTTGATCTTTTTTAGACTTTTCAGTTTAATTATCTTAATTTATCATAATCA 1051
Query 898 GGTTGTTTCCTTTGTTGTTGTAATGTCTGGTTGCATATT-GATGAGAAATCCTTTTGTAG 956
|||||||||||||||||||||||||| | |||| ||||| |||||| |||||||||||||
Sbjct 1052 GGTTGTTTCCTTTGTTGTTGTAATGTGTCGTTGAATATTTGATGAGTAATCCTTTTGTAG 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5