BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480012
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25040.1 | Symbols: ERD2B | endoplasmic reticulum retention ... 1537 0.0
> AT3G25040.1 | Symbols: ERD2B | endoplasmic reticulum retention
defective 2B | chr3:9124304-9126298 FORWARD LENGTH=1070
Length=1070
Score = 1537 bits (832), Expect = 0.0
Identities = 933/981 (95%), Gaps = 10/981 (1%)
Strand=Plus/Plus
Query 58 AAGCAAGGAGCTTC---ATAAAACCCTAGAGAGATCTTTGTTTCTCCAATTTCAGAAGAC 114
|||||||||||||| |||||||||| |||||| |||||||||||||||||| |||||
Sbjct 94 AAGCAAGGAGCTTCATAATAAAACCCT--AGAGATATTTGTTTCTCCAATTTCAAAAGAC 151
Query 115 GAGACGTGAAGAAGACGATCGAAGATGAACATTTTCAGATTAGCTGGTGATATGACTCAC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 GAGACGTGAAGAAGACGATCGAAGATGAACATTTTCAGATTAGCTGGTGATATGACTCAC 211
Query 175 CTAGCCAGTGTTCTGGTCTTGCTTCTCAAGATCCACACCATCAAATCCTGCGCTGGTGTT 234
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 CTAGCCAGTGTTCTTGTCTTGCTTCTCAAGATCCACACCATCAAATCCTGCGCTGGTGTT 271
Query 235 TCATTGAAGACTCAAGAACTCTATGCCATTGTCTTTGCGACGCGATATTTGGATATTTTC 294
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 272 TCATTGAAGACTCAAGAACTCTATGCCATTGTCTTTGCGACGCGTTATTTGGATATTTTC 331
Query 295 ACGAGTTTCGTGTCTCTCTATAACACCTCTATGAAGTTGGTGTTCTTAGGAAGTTCCTTT 354
|||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| |||
Sbjct 332 ACGAGTTTTGTGTCTCTGTACAACACCTCTATGAAGTTGGTGTTTTTAGGAAGTTCTTTT 391
Query 355 TCGATTGTTTGGTATATGAGGTATCATAAGGCTGTCCACAGGACTTACGACAGGGAGCAA 414
|||||||| ||||| |||| |||||||||||| |||||||||||||||||||| ||||||
Sbjct 392 TCGATTGTGTGGTACATGAAGTATCATAAGGCCGTCCACAGGACTTACGACAGAGAGCAA 451
Query 415 GATACGTTTCGTCATTGGTTCCTTGTGCTTCCTTGCTTACTCTTAGCTCTTCTGATTCAT 474
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 452 GATACGTTTCGTCATTGGTTCCTTGTGCTTCCTTGCTTTCTCTTAGCTCTTTTGATACAT 511
Query 475 GAAAAGTTTACCTTTCTCGAGGTTTTGTGGACGTTTTCATTGTACTTGGAGGCTGTTGCC 534
||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 512 GAAAAGTTTACCTTTCTTGAGGTATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCC 571
Query 535 ATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGGCAA 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 572 ATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAA 631
Query 595 TACATATTTCTCCTTGGGGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTAC 654
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TATATATTTCTCCTTGGGGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTAC 691
Query 655 TTCACTGAGCCGCACTTTGTTCACTGGATAACATGGATCGCCGGGTTTGTTCAAACACTG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 TTCACTGAGCCGCACTTTGTTCACTGGATAACATGGATCGCCGGGTTTGTTCAAACACTG 751
Query 715 CTCTATGCCGACTTCTTTTATTATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAG 774
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 752 CTCTATGCCGACTTCTTCTATTATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAA 811
Query 775 TTACCAGCTTAATTTCTAAATTTTCAATGCTCGGAAACCCTACGGATTCAATTTGGTGCC 834
|||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct 812 TTACCAGCTTAATTTCTAAAGTTTCAATGCTCGGGAACCCTACGGATTCGATTTGGTGCC 871
Query 835 CGACACAATATCCACCCGGA-TGTTACCAATTTTACTCTGATGGTGGTTAGTAGAGGAGA 893
||||| || ||| ||| ||| |||||||||||| |||||| ||||||||| |||||||||
Sbjct 872 CGACAAAACATCTACC-GGAATGTTACCAATTT-ACTCTGTTGGTGGTTATTAGAGGAGA 929
Query 894 ACGAGCATAGATGTGTAAACTCCAGCAATCTAACTTATTATACTTTCTTTAGACTTTCTC 953
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 930 ACGAGCATAGATGTGTAAACTCCAGCAATCTAACTTATTACACTTTCTTTAGACTTTCTC 989
Query 954 GTCTCTCTTCttttttt-GGT-GAGTTAGTGTTACTAAATATTTCGACATGACAGTAATA 1011
||||||| ||||||||| ||| || ||||||||||||||||||||||| ||||||||||
Sbjct 990 GTCTCTCATCTTTTTTTTGGTCGACTTAGTGTTACTAAATATTTCGACGCGACAGTAATA 1049
Query 1012 TATTCATCACAATTCACAACG 1032
|||||| ||||||||||||||
Sbjct 1050 TATTCACCACAATTCACAACG 1070
Score = 84.2 bits (45), Expect = 2e-15
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1 GaaaaaaaaaaaCAGAGAAAATTGGTGGAAACGCCATTAACGAGATCTAGCACGAAC 57
||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||
Sbjct 11 GAAAATAAAAAACAGAAAAAATTCGTGGAAACGCCATTAACGAGATCTAGCACAAAC 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5