BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480014
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3... 1423 0.0
> AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:9132310-9134030
FORWARD LENGTH=1067
Length=1067
Score = 1423 bits (770), Expect = 0.0
Identities = 994/1094 (91%), Gaps = 48/1094 (4%)
Strand=Plus/Plus
Query 1 AAGGGTCAAAGAATTCATAGCATCA-C-TTAGTCAACGCTTTGATATAActtcttcttct 58
|||||||||||||| |||||||||| | ||||||||||||| ||||| |||||
Sbjct 1 AAGGGTCAAAGAATACATAGCATCACCACTAGTCAACGCTTT--TATAA----AACTTCT 54
Query 59 tcttcgtctcctctccttctcacatctctctgtctttctctttctctctcAAACCTATC- 117
|||||||||||||||||||||||||||||| || | ||||||||||||||||||| |
Sbjct 55 TCTTCGTCTCCTCTCCTTCTCACATCTCTC--TC--TGTCTTTCTCTCTCAAACCTAACA 110
Query 118 AAAGCTTTAGACTTCAATTCTTTAGCTACCTCTCTCCCATGGCACGTTCGAATGTACCCA 177
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 111 AAAGCTTCAGACTTCAATTCTTTAGCTACCTCTCTCCCATGGCACGTTCGAATGTACCAA 170
Query 178 AATTTGGAAACTGGGAAGCTGAGGAGAATGTTCCTTACACAGCTTACTTTGACAAAGCTC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AATTTGGAAACTGGGAAGCTGAGGAGAATGTTCCTTACACAGCTTACTTTGACAAAGCTC 230
Query 238 GTAAGACTCGAGCACCCGGTGGCAAGATCATTAACCCGAATGACCCGGAGTATAACTCTG 297
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 231 GTAAGACTCGAGCACCCGGTAGCAAGATCATGAACCCGAATGACCCGGAGTATAACTCTG 290
Query 298 ATTCTCAATCACAAGCTCCTCCTC--C-TCCTTC--C-AGAACCAAAGCTGAGCAAGTTG 351
| |||||||||||||||||||||| | |||||| | ||||||||| ||||||||||||
Sbjct 291 ACTCTCAATCACAAGCTCCTCCTCATCCTCCTTCTTCCAGAACCAAACCTGAGCAAGTTG 350
Query 352 AGC-CGGTTAGAAGATCGCGTGAGCATACGAGAAGCCGAGAAGAGAGCGAGTTGAAGCAG 410
| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||
Sbjct 351 A-CACGGTTAGAAGATCACGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTGAAACAG 409
Query 411 TTTGGTGATGCTGGTGGTTCATCAAATGAAGCTGCTAACAAAAGACAAGGAAGAGCTTCT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TTTGGTGATGCTGGTGGTTCATCAAATGAAGCTGCTAACAAAAGACAAGGAAGAGCTTCT 469
Query 471 CAGAACAATAGTTATGACAA---GTCACCTTTGCATAAGAATTCATATGATGGTACTGGA 527
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 470 CAGAACAATAGTTATGACAACAAGTCACCTTTGCATAAGAATTCTTATGATGGTACTGGA 529
Query 528 AAATCTAGGCCTAAACCTGCTAACCTTAGAGCTGATGAAAGCCCTGAAAAAGTCACAGTG 587
|||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||
Sbjct 530 AAATCTAGGCCTAAACCTACCAACCTTAGAGCTGATGAAAGTCCTGAAAAAGTCACAGTG 589
Query 588 GTGCCGAAGTTCGGTGACTGGGACGAGAACAACCCGTCATCAGCTGATGGATACACACAT 647
||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 590 GTGCCTAAATTCGGTGACTGGGACGAGAACAACCCGTCATCAGCTGACGGATACACGCAT 649
Query 648 ATCTTCAATAAAGTCCGCGAAGAGAGAAGTTCTGGAGCAAATGTGAGTGGATCTTCAAGA 707
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ATCTTCAATAAAGTCCGTGAAGAGAGAAGTTCTGGAGCAAATGTGAGTGGATCTTCAAGA 709
Query 708 ACACCGACTCATCCAAA-CTCCAGTAAACCTAACAACACTTCCACATGTTGCTGCTTTGG 766
|| |||||||||| ||| |||| |||| || |||||||||||| ||||||||||||||||
Sbjct 710 ACGCCGACTCATC-AAAGCTCCCGTAACCCGAACAACACTTCCTCATGTTGCTGCTTTGG 768
Query 767 CTTTGGAGGAAAATGAAAGGGAAATGTTTCCGGAAGATTGTATATACTTATTGAGAAATC 826
|||||||||||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 769 CTTTGGAGGAAAATGAAAGGGA-------CCGGAAGATTGTATATAGTTATCGAGAAATC 821
Query 827 AGTGTGTAATCTTAATGATCAGACCGACGATCGAGCTTCTTTAGATGAAATAAGGCATCA 886
||||||||||||| ||||| |||| | ||| |||||||||||||||||||||||| |
Sbjct 822 AGTGTGTAATCTTGATGATTAGAC--AT--TCGTGCTTCTTTAGATGAAATAAGGCATAA 877
Query 887 GTAC-CACTTGCATAAGAtttt-atagtatagtttt-gtatgtatcttttgtaatttttc 943
|| | ||||||||||||||||| |||||||| |||| |||||||| ||||| |||| |||
Sbjct 878 GT-CTCACTTGCATAAGATTTTTATAGTATAATTTTTGTATGTATATTTTGCAATTCTTC 936
Query 944 cttgatacttttggtgttttttCATAAGACACAATCTAGTTTTGGACCTGCTTGCAGATG 1003
||| |||||||||||||||| ||||||||||| || ||||| ||| |||||||||||||
Sbjct 937 CTTAATACTTTTGGTGTTTT--CATAAGACACATTCCAGTTTCGGATCTGCTTGCAGATG 994
Query 1004 CATTATATCTTG---G-TACTGCCTGACCAATTTGGTTAACCGATTTGATACAAATCAGA 1059
|||||||||||| | ||| |||||| ||||||| ||| ||||||||| |||||||
Sbjct 995 CATTATATCTTGCTTGGTACGGCCTGAGTGATTTGGT-AACTGATTTGATATGAATCAGA 1053
Query 1060 GATATTTGGGTACC 1073
||||||||||||||
Sbjct 1054 GATATTTGGGTACC 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5