BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480015
Length=1972
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25100.1 | Symbols: CDC45 | cell division cycle 45 | chr3:91... 3090 0.0
> AT3G25100.1 | Symbols: CDC45 | cell division cycle 45 | chr3:9143999-9146209
FORWARD LENGTH=2211
Length=2211
Score = 3090 bits (1673), Expect = 0.0
Identities = 1858/1946 (95%), Gaps = 17/1946 (1%)
Strand=Plus/Plus
Query 29 ATTCAATTTCACGGATATGGTGAGGATTCAGAAAGTAGAATCGTTCTACGCGAAGCTTCG 88
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 278 ATTCAATTTCACGGAAATGGTGAGGATTAAGAAAGTAGAATCGTTCTACGCGAAGCTTCG 337
Query 89 TGAGTCAGCTACTTCATTATCTTCACAGAATCCACTTTTGATATTTCCTTCAACATCTGA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TGAGTCAGCTACTTCATTATCTTCACAGAATCCACTTTTGATATTTCCTTCAACATCTGA 397
Query 149 TGTTGATTCACTTTGTGCGCTTAAGGTTATTACTCATATCCTCGAATCAGATTCGATTCA 208
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 398 TGTTGATTCACTTTGTGCGCTTAAGGTTATTACTCATATCCTTGAATCAGATTCGATTCA 457
Query 209 GTATTCTTGTTTCCCTGTATCGTCTTTTTTGGAGATTCACAAGTATGCTGGTCCTGCTGG 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GTATTCTTGTTTCCCTGTATCGTCTTTTTTGGAGATTCACAAGTATGCTGGTCCTGCTGG 517
Query 269 TTTGTGTTCTACTTCGTCT-GAGTCTCCTCCTGTTACTATACTGTTGATTAATTGGGGTT 327
||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 518 TTTGTGTTCTACTTCGT-TGGAGAGTCCTCCTGTTACTATACTGTTGATTAATTGGGGTT 576
Query 328 GTCACCGTGATTTGAAGCTCGTGTTGAAGTTAGGTCCCGCGGCTCGTGTTTTTGTTGTTG 387
||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct 577 GTCACCGTGATTTGAAGCTTGTGTTGAAGTTAGGTCCTTCGGCTCGTGTTTTCGTTGTTG 636
Query 388 ATAGTCATAGGCCTATTCATTTGCATAATCTTAGTGATTATAATGAGCAAGTTGTTGTTC 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 ATAGTCATAGGCCTATTCATTTGCATAATCTTAGTGATTATAATGAGCAAGTTGTTGTTC 696
Query 448 TTCATACTGATGATGATGAGAGACAAGCTGATTTGGCTTATGATTTCGATGTGTTGAAAT 507
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 697 TTCATACTGATGATGATGAGAGGCAAGGTGATTTGGCTTATGATTTCGATGTGTTGAAAT 756
Query 508 TGGCGAACGAGAGCTTTCAGTTACATGTagaagaagggggtgaatctg-atgaggaggag 566
||||||| |||||||||||||||| ||||||||| | |||||| | || || |||
Sbjct 757 TGGCGAATGAGAGCTTTCAGTTACGTGTAGAAGATGCTGGTGAA---GAAT-CTGATGAG 812
Query 567 gaggaggaagaagatgaggaagaggaagatgaggatgatgatgatgatgatggagatggt 626
||||| | |||||||||||||| | |||||||| ||||||||||||||| ||||||
Sbjct 813 GAGGA-G--GAAGATGAGGAAGA-G--GATGAGGAGGATGATGATGATGAT---GATGGT 863
Query 627 gatAGGCCAAGTAAGAGGAGAAAAATGGGAGATGGTGTGAAGGTTTTCAAGAAGTTAAAG 686
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 864 GATAGGCCAAGTAAGAGGAGGAAAATGGGAGATGGTGTGAAGGTTTTCAAGAAGCTAAAG 923
Query 687 AGGGATTATTACAAGATGGGGACTTTTCATGGGAAGCCATCGGGATGTTTGTTGTTTGAG 746
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 924 AGGGATTATTACAAGATGGGGACTTTTCATGGGAAGCCATCGGGGTGTTTGTTGTTTGAG 983
Query 747 CTATCTCATATGTTGAGGAAGAACACAAATGAGCTGCTGTGGCTGGCTTGTGTTTCTTTG 806
|||||||||||||||||||||||||| || ||| || |||||||||||||||||||||||
Sbjct 984 CTATCTCATATGTTGAGGAAGAACACTAACGAGTTGTTGTGGCTGGCTTGTGTTTCTTTG 1043
Query 807 ACTGATCAGTTTGTTCATGAGAGGTTGACTGATGAAAGATACCAAGCTGCGGTTATGGAG 866
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1044 ACTGATCAGTTTGTTCATGAGAGGTTGACTGATGAAAGATATCAAGCTGCGGTTATGGAG 1103
Query 867 CTTGAACAACACATCAATAGCTCAGGGAATATAGATAAGATCACTTCTGTTACTTTGAAA 926
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1104 CTTGAACAACACATCAATAGCTCAGGGAATATAGATAAGATCACTAGTGTTACTCTGAAA 1163
Query 927 GATGGAACCAAGGTTCGAGCACCTGACTGTTCGAGAATCTCTTATGAAGAAGAGCCTAGG 986
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1164 GATGGAACCAAGGTTCGAGCACCAGACTGTTCAAGAATCTCTTATGAAGAAGAGCCTAGG 1223
Query 987 CTTATGCTTCTCAGGGAGTGGACGTTGTTTGACTCTATGCTTTGTTCTTCATACATTGCG 1046
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1224 CTTATGCTTCTTAGAGAGTGGACGTTGTTTGACTCCATGCTTTGTTCTTCATACATTGCG 1283
Query 1047 ACTAAGTTGAAGACATGGAGCGATAACGGCATCAAGAAACTTAAGCTTCTTCTAGCACGT 1106
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1284 ACTAAGTTGAAGACATGGAGTGATAACGGTATCAAGAAACTTAAGCTTCTTCTAGCGCGT 1343
Query 1107 ATGGGATTTGCGCTTATCGAGTGCCAGCAAAAGTTTCCATACATGAGCCATGAGGTGAAA 1166
||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 1344 ATGGGATTTGCACTTATCGAGTGTCAGCAAAAGTTTCCGTACATGAGCCTTGAGGTGAAG 1403
Query 1167 AGGAAAATGAAGCAAGAGTTTGATCGGTTTTTGCCAGAATATGGGCTTAATGATTTCTAC 1226
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 AGGAAGATGAAGCAAGAGTTTGATCGGTTTTTGCCAGAATATGGGCTTAATGATTTCTAC 1463
Query 1227 TACCGGAGTTTCTTGAGGCTTCATGGTTATAGCTCAAGGGTCTCTGCTGCAGATGTTGTG 1286
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 TACCGGAGTTTCTTGCGGCTTCATGGTTATAGCTCAAGGGTCTCTGCTGCAGATGTTGTC 1523
Query 1287 TATGGTATTACAGCACTTCTTGAATCATTTCTTGGATCAGGTGGCTCCTCTGCTTCAAAA 1346
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1524 TATGGTATTACAGCACTTCTTGAATCATTTCTTGGGTCAGGTGGCTCCTCTGCTTCAAAA 1583
Query 1347 CAGTTTGGCGAAGCTTATGATGCTCTGTCTTTGAACAATTTGGATAAACTTCGGTCTGGG 1406
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1584 CAGTTTGGTGAAGCTTATGATGCTCTGTCTTTGAACAATTTGGATAAACTTCGATCTGGG 1643
Query 1407 ATGCAACAAGCAATCAAGGTTCAACGAGCAATTCTTAGACAAGGAAGTGCAGCAATCACC 1466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 ATGCAACAAGCAATCAAGGTTCAACGAGCAATTCTTAGACAAGGAAGTGCAGCAATCACT 1703
Query 1467 AAAACTGGATGCATCCGAAGTGGTAGGAAATTCAGATGGGTGAAGATTGAAGATTCCATG 1526
|||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1704 AAAAGTGGATGCATTCGAAGTGGTAGGAAATTCAGATGGGTAAAGATTGAAGATTCAATG 1763
Query 1527 GATGCTAAGTATTTGGGATATCCTCAGGCCTTAACAAAATTTTGTTACTTTCTAATGGAT 1586
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1764 GATGCGAAGTATTTGGGATATCCTCAGGCCTTAACAAAATTCTGTTACTTTCTGATGGAT 1823
Query 1587 GCTTTGAGAGAGAAAGGAGCTAGGATGAAACCGATGCTATGTGCCTGCGCATCTCAACAA 1646
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1824 GCTTTGAGAGAGAAAGGAGCTAGGATGAAACCAATGCTATGTGCCTGCGCATCTCAACAA 1883
Query 1647 CCTGGGAAGTTACTCGTGGTTGGAGTTTGTGGGAAGCCGAGGCTCGGGGCAGTCAGAGGG 1706
||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1884 CCTGGGAAGATACTCGTGGTTGGGGTTTGTGGGAAACCGAGGCTCGGGGCAGTCAGAGGG 1943
Query 1707 AATGCTTTTGGCAATGCTTTCAGAAAGGCAGCTCAAGAAAGTAGAGCTGATTACTTTCAC 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 AATGCTTTTGGCAATGCTTTCAGAAAGGCAGCTCAAGAAAGTAGAGCTGATTACTTTCAC 2003
Query 1767 GAGCTTTTCGAGTCTTCATGGATTGTCTTGGATGCTTCTGCAGTTAACTCTTTCATGATT 1826
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 GAGCTATTCGAGTCTTCTTGGATTGTCTTGGATGCTTCTGCAGTTAACTCTTTCATGATT 2063
Query 1827 AGATTAACTGAGAAGCTCTGACATAGACTCATCGTTCTTCGATTCAATGTgttttctttt 1886
|||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||||
Sbjct 2064 AGATTAACCGAGAAGCTCTGACATAGTCTCATTGTTCTTCGATTCAGTGTGTTTTCTTTT 2123
Query 1887 acagttttcagtttttatctcactgttttcattttttACGAGCCTGTGTAATAGGCAGAA 1946
| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 2124 ATAGTTTTCAGTTTT-ATCTCACTGTTTGCATTTTTTACGAGCCTGTGTAATAGGCACAA 2182
Query 1947 TCTGTTATCAATCATGTAACTTGTTT 1972
||||||||||||||||||||||||||
Sbjct 2183 TCTGTTATCAATCATGTAACTTGTTT 2208
Score = 54.7 bits (29), Expect = 3e-06
Identities = 32/33 (97%), Gaps = 1/33 (3%)
Strand=Plus/Plus
Query 1 CTTATTAGGGATTTGATTGGATCTACAAA-TTC 32
||||||||||||||||||||||||||||| |||
Sbjct 232 CTTATTAGGGATTTGATTGGATCTACAAAATTC 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97690260570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5