BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480016
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25110.1 | Symbols: AtFaTA, FaTA | fatA acyl-ACP thioesteras... 2178 0.0
AT4G13050.1 | Symbols: | Acyl-ACP thioesterase | chr4:7617561-... 813 0.0
> AT3G25110.1 | Symbols: AtFaTA, FaTA | fatA acyl-ACP thioesterase
| chr3:9146271-9148486 REVERSE LENGTH=1620
Length=1620
Score = 2178 bits (1179), Expect = 0.0
Identities = 1328/1399 (95%), Gaps = 14/1399 (1%)
Strand=Plus/Plus
Query 47 AAAAGATGTTGAAGCTTTCGTGTAATGTGACTGATTCTAAGTTACAGAGAAGCTTATTGT 106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 209 AAAAGATGTTGAAGCTTTCGTGTAATGTGACTGATTCTAAGTTACAGAGAAGCTTACTCT 268
Query 107 TCTTCTCGCATTC-TCATCGATCTGATCCGGTGAATTTCATTCGTCGGAGAATCGTCTCT 165
||||||| ||||| | ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 269 TCTTCTCCCATTCAT-ATCGATCTGATCCGGTGAATTTCATCCGTCGGAGAATTGTCTCT 327
Query 166 TGTTCTCAGACGAAGAAGACGGGTTTGGTTCCTTTGCGTGCGGTTGTATCTACTGATCAA 225
|||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 328 TGTTCTCAGACGAAGAAGACAGGTTTGGTTCCTTTGCGTGCTGTTGTATCTGCTGATCAA 387
Query 226 GGAACTGTGATTCAAGGTTTGGGTACTCTCGCGGATCAGCTCCGATTAGGTAGTTTGACG 285
|||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 388 GGAAGTGTGGTTCAAGGTTTGGCTACTCTCGCGGATCAGCTCCGATTAGGTAGTTTGACT 447
Query 286 GAAGATGGTTTATCGTATAAAGAGAAGTTTGTTGTTAGATCTTACGAAGTCGGTAGTAAC 345
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 448 GAAGATGGTTTATCTTATAAAGAGAAGTTTGTTGTTAGATCTTACGAAGTGGGTAGTAAC 507
Query 346 AAAACCGCTACCATTGAAACCATTGCTAATCTTTTACAGGAGGTGGGATGTAATCATGCA 405
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 AAAACCGCTACTGTTGAAACCATTGCTAATCTTTTACAGGAGGTGGGATGTAATCATGCA 567
Query 406 CAAAGTGTTGGATTTTCGACTGATGGATTTGCAACAACACCAACTATGAGGAAATTGCAT 465
||||||||||| |||||||||||||| |||||||||||| | ||||||||||| ||||||
Sbjct 568 CAAAGTGTTGGTTTTTCGACTGATGGGTTTGCAACAACAACTACTATGAGGAAGTTGCAT 627
Query 466 CTCATTTGGGTTACTGCAAGAATGCACATTGAGATCTACAAATACCCTGCTTGGGGTGAT 525
||||||||||||||||| |||||||| || |||||||| || ||||||||||||||||||
Sbjct 628 CTCATTTGGGTTACTGCGAGAATGCATATCGAGATCTATAAGTACCCTGCTTGGGGTGAT 687
Query 526 GTGGTTGAGATAGAGACATGGTGTCAGAGTGAAGGAAGGATTGGGACAAGGCGTGATTGG 585
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GTGGTTGAGATAGAGACTTGGTGTCAGAGTGAAGGAAGGATTGGGACAAGGCGTGATTGG 747
Query 586 ATTCTTAAGGATTGTGTCACTGGTGAAGTCACTGGCCGTGCTACAAGCAAGTGGGTGATG 645
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 ATTCTTAAGGATTCTGTCACTGGTGAAGTCACTGGCCGTGCTACAAGCAAGTGGGTGATG 807
Query 646 ATGAACCAAGACACAAGACGGCTTCAGAAAGTTTCTGATGATGTTCGGGACGAGTACTTG 705
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 ATGAACCAAGACACGAGACGGCTTCAGAAAGTTTCTGATGATGTTCGGGACGAGTACTTG 867
Query 706 GTCTTCTGTCCTCAAGAACCGAGATTAGCATTTCCGGAAGAGAATAACAGAAGCTTGAAG 765
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 868 GTCTTCTGTCCTCAAGAACCGAGGTTAGCATTTCCGGAAGAGAATAACAGAAGCTTGAAG 927
Query 766 AAAATCCCGAAACTCGAAGATCCGGCTCAGTATTCGATGATTGGGCTTAAGCCTAGACGA 825
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 928 AAAATCCCGAAACTCGAAGATCCGGCTCAGTATTCAATGATTGGGCTTAAGCCTAGACGA 987
Query 826 GCTGATCTCGACATGAACCAGCATGTGAATAATGTCACCTATATTGGATGGGTTCTCGAG 885
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 988 GCTGATCTCGACATGAACCAGCATGTCAATAATGTCACCTATATTGGATGGGTTCTCGAG 1047
Query 886 AGCATACCGCAAGAAATTGTAGACACGCACGAGCTTCAGGTCATAACTCTGGATTACAGA 945
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1048 AGCATACCACAAGAAATTGTAGACACGCACGAGCTTCAGGTCATAACTCTGGATTATAGA 1107
Query 946 AGAGAATGTCAACAAGACGATGTGGTGGATTCACT------CACCACCTCGGAAATCGGT 999
||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 1108 AGAGAATGTCAACAAGACGATGTGGTGGATTCACTCACCACCACCACCTCTGAAATTGGT 1167
Query 1000 GCAACCAATGGCTCTGCCACGTCTGGCACACAGGGCCACAACGATAGCCAGTTCTTGCAC 1059
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GGAACCAATGGCTCTGCCACGTCTGGCACACAGGGCCACAACGATAGCCAGTTCTTGCAC 1227
Query 1060 CTCCTGAGGTTGTCTGGAGATGGCCAGGAGATCAACCGCGGGACAACCCTGTGGAGAAAG 1119
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1228 CTCCTGAGGTTGTCTGGAGATGGTCAGGAGATCAACCGCGGGACAACTCTGTGGAGAAAG 1287
Query 1120 AAGCCGTCAAGATAAGAAATAGACAATCTCTTAAGCCATTTTGTTCTCAAGTTTCCATCA 1179
||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1288 AAGCCTTCAAGTTAAGAAATAGACAATGTCTTTAGCCATTTTGTTCTCAAGTTTCCATCA 1347
Query 1180 TCTCAATGAAGATTTCGCTTCACGAGTCTGAGCTGGTCTC-AtttttttCTCTTTCAAAT 1238
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
Sbjct 1348 TCTCAATGAAGATTTCGCTTCACGAGTCTGAGCAGGTCTCCATTTTTTTCTCTTTCAAGT 1407
Query 1239 TTGGGTTAGAATAGAGGGAACCAGATTGTTGGAGTA--A-TCTTTGTTGAACTTGATTAT 1295
|||||||||| |||||||||| ||||||||||||| | ||||||||||| || |||||
Sbjct 1408 TTGGGTTAGACTAGAGGGAACTGGATTGTTGGAGTATTAATCTTTGTTGAATTTCATTAT 1467
Query 1296 GTTTGTTCATGTTTTTGTACAAATTTTGGGGATTTAGCCAAACCCATATCTTCTTTGGTC 1355
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1468 GTTTGTTCATGTTTTTGTACAAATTTTGGGGATTTAGCCAAACCCATATCGTCTTTGGTC 1527
Query 1356 TTGTCTTGTGCCTGCGTGTATTTCTAATTTATCCTTTCCAAACACAAACATTGTTCATCA 1415
||||||||||||||||||||||| |||| ||||| ||| ||||||| | |||||||| |
Sbjct 1528 TTGTCTTGTGCCTGCGTGTATTTTTAATCTATCCGTTCAAAACACAGA--TTGTTCATTA 1585
Query 1416 GATGTTTTATATAAACAGA 1434
|||||||||||||||||||
Sbjct 1586 GATGTTTTATATAAACAGA 1604
Score = 56.5 bits (30), Expect = 7e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1 TTCTTCTTCACCTCGGACCCATCGGAGAGA 30
||||||||||||||||||||||||||||||
Sbjct 86 TTCTTCTTCACCTCGGACCCATCGGAGAGA 115
> AT4G13050.1 | Symbols: | Acyl-ACP thioesterase | chr4:7617561-7619616
FORWARD LENGTH=1543
Length=1543
Score = 813 bits (440), Expect = 0.0
Identities = 655/758 (86%), Gaps = 17/758 (2%)
Strand=Plus/Plus
Query 247 GGTAC-TCT-C-GCGGATCAG-CTCCGATTAGGTAGTTTGACGGAAGAT-GGTTTATCGT 301
||||| ||| | ||||||| | ||||| || ||| | |||| ||||||| ||||| || |
Sbjct 368 GGTACTTCTCCGGCGGATC-GTCTCCGGTTTGGTCGATTGATGGAAGATGGGTTT-TCTT 425
Query 302 ATAAAGAGAAGTTTGTTGTTAG-ATCTTACGAAGTCGGTAGTAACAAAACCGCTACCATT 360
|||| |||||||| ||||||| | | || ||||| || | ||||||||| || ||||||
Sbjct 426 ATAAGGAGAAGTTCATTGTTAGAAGC-TATGAAGTTGGGATTAACAAAACTGCCACCATT 484
Query 361 GAAACCATTGCTAATCTTTTACAGGAGGTGGGATGTAATCATGCACA-AAGTGTTGGATT 419
||||| ||||||||||| || ||||| |||| ||||||||||| || || |||||||||
Sbjct 485 GAAACAATTGCTAATCTCTTGCAGGAAGTGGCATGTAATCATGTTCAGAA-TGTTGGATT 543
Query 420 TTCGACTGATGGATTTGCAACAACACCAACTATGAGGAAATTGCATCTCATTTGGGTTAC 479
||| |||||||||||||| ||||||| || ||||||||||||||||| |||||||||||
Sbjct 544 TTCTACTGATGGATTTGCTACAACACTTACCATGAGGAAATTGCATCTTATTTGGGTTAC 603
Query 480 TGCAAGAATGCACATTGAGATCTACAAATACCCTGCTTGGGGTGATGTGGTTGAGATAGA 539
||||||||||||||||||||| ||||| || || |||||| |||||||||||||||| ||
Sbjct 604 TGCAAGAATGCACATTGAGATTTACAAGTATCCAGCTTGGAGTGATGTGGTTGAGATTGA 663
Query 540 GACATGGTGTCAGAGTGAAGGAAGGATTGGGACAAGGCGTGATTGGATTCTT-AAGGATT 598
||| |||||||||||||||||||||||||| || || |||||||||||| || |||||||
Sbjct 664 GACTTGGTGTCAGAGTGAAGGAAGGATTGGAACTAGACGTGATTGGATT-TTAAAGGATT 722
Query 599 GTGTC-ACTGGTGAAGTCACTGGCCGTGCTACAAGCAAGTGGGTGATGATGAACCAAGAC 657
||| | ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 723 GTG-CTACTGGTGAAGTTATTGGACGTGCTACAAGCAAGTGGGTGATGATGAACCAAGAC 781
Query 658 ACAAGACGGCTTCAGAAAGTTT-CTGATGATGTTCGGGACGAGTACTTGGTCTTCTGTCC 716
||||| |||||||| || | || | || || |||||||||||||||||||| ||||||||
Sbjct 782 ACAAGGCGGCTTCA-AAGGGTTACAGACGAAGTTCGGGACGAGTACTTGGTTTTCTGTCC 840
Query 717 TCAAGAACCGAGATTAGCATTTCCGGAAGAGAATAACAGAAGCTTGAAGAAAATCCCGAA 776
|| ||| || ||| |||| ||||| || ||||| || || ||||| ||||||||||||||
Sbjct 841 TCCAGAGCCTAGACTAGCGTTTCCAGAGGAGAACAATAGCAGCTTAAAGAAAATCCCGAA 900
Query 777 ACTCGAAGATCCGGCTCAGTATTCGATGATTGGGCTTAAGCCTAGACGAGCTGATCTCGA 836
| | |||||||| ||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 901 ATTGGAAGATCCTGCTCAGTATTCTATGCTTGGGCTTAAGCCTAGACGAGCTGATCTTGA 960
Query 837 CATGAACCAGCATGTGAATAATGTCACCTATATTGGATGGGTTCTCGAGAGCATACCGCA 896
||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||
Sbjct 961 CATGAACCAACATGTGAATAATGTTACCTACATTGGATGGGTCCTTGAGAGCATACCGCA 1020
Query 897 AGAAATTGTAGACACGCACGAGCTTCAGGTCATAACTCTGGATTACAGAAGAGAATGTCA 956
|||||| ||||||||||||||||| | || |||||||| ||||||||||||||||| ||
Sbjct 1021 AGAAATCATAGACACGCACGAGCTTAAAGTTATAACTCTAGATTACAGAAGAGAATGCCA 1080
Query 957 ACAAGACGATGTGGTGGATTCACTCACCACCTCGGAAA 994
||||| || | || |||||||| |||||||| ||||
Sbjct 1081 GCAAGATGACATTGTAGATTCACTTACCACCTCTGAAA 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5