BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480017 Length=810 Score E Sequences producing significant alignments: (Bits) Value AT3G25120.1 | Symbols: | Mitochondrial import inner membrane t... 996 0.0 > AT3G25120.1 | Symbols: | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr3:9149544-9151123 REVERSE LENGTH=866 Length=866 Score = 996 bits (539), Expect = 0.0 Identities = 606/639 (95%), Gaps = 2/639 (0%) Strand=Plus/Plus Query 1 GATTCACAACACCGCATTGAAATTGGAG-TCTCTC-AAGTTCCGTGGCGTCAAAAATGGC 58 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 1 GATTCACAACACCGCATTGAAATTGGAGTTCTCTCGAAGTTCCGTGGCGTCAAAAATGGC 60 Query 59 GTCAGGTGATCGGGAATCTCCAGATCGAACGAATCAACCGTTGTCTCCTCCAACGCCGAT 118 || ||||||||| |||| ||||| | ||| ||||| |||| |||||||| ||||| || Sbjct 61 GTTGGGTGATCGGAAATCCCCAGAACAAACAAATCAGGCGTTATCTCCTCCGACGCCTAT 120 Query 119 TGTGCAAGAAAACGGAACTCCGACGAAGCGTGTGTTGATCACTTCCCTTTTAGCAGGAGT 178 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGTGCAGGAAAATGGAACTCCGACGAAGCGTGTGTTGATCACTTCCCTTTTAGCAGGAGT 180 Query 179 AATTGGTGGAGGAGCTGGTTTAGTGTCTAAACACCGGATAGCTCATCCCAATATTCCTAC 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AATTGGTGGAGGAGCTGGTTTAGTGTCTAAACACCGGATAGCTCATCCCAATATTCCTAC 240 Query 239 TGTTTACGCTACTAATTGTGCTATTGTCGCTGGTTGCTATTGCGGAGCTCGTGAATCTGT 298 |||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 241 TGTTTACGCTGCTAATTTTGCTATTGTCGCCGGTTGCTATTGCGGAGCTCGTGAATCTGT 300 Query 299 GAGAATAACTCGAAGATCAGAACACGATGATTTAATGAACTCAGCTATTGGAGGACTTTT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GAGAATAACTCGAAGATCAGAACACGATGATTTAATGAACTCAGCTATTGGAGGACTTTT 360 Query 359 CAGTGGTGCTTTGCTTGGACGACTTCAAGGAGGTCCTCAGGGTGCGATTCGCTACTCTCT 418 |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 361 TAGTGGTGCTTTGCTTGGAAGACTTCAAGGAGGTCCTAAGGGTGCGATTCGCTACTCTCT 420 Query 419 AGTTTTTGCTGCTGTAGGCACAGCATTTGATTATGCTTCCCTTAAAGCAAAACCAATGTT 478 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 421 AGTTTTTGCTGCTGTAGGCACAGCATTTGATTATGCTACCCTTAAAGGAAAACCAATGTT 480 Query 479 AGAGAGCTACCGTAACATGGAGTCGTTCAAATTACCTGAATGGTCTCCTATTAAAATCCT 538 |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| Sbjct 481 AGAGAGCTACCGTAACATGGAGTCATTCAAGTTACCTGAATGGTCTCCTATTAAAGTCCT 540 Query 539 CGACGAAGAAGCCTTAGCAAAGAAGAAAGCTCAGGAAGAGAAAATATTCCCCGAAAGAGT 598 ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct 541 CGACGAAGAAGCCTTAGCAAAGAAGAAAGCTCATGAAGAGAAGATATTCCCTGAAAGAGT 600 Query 599 CCTCGGCAAATTAAACAAGGAATAGTCTTGACCAACTTA 637 |||||||||||| ||||| |||||||||| ||||||||| Sbjct 601 CCTCGGCAAATTGAACAAAGAATAGTCTTAACCAACTTA 639 Score = 222 bits (120), Expect = 4e-57 Identities = 141/151 (93%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 662 TGAAAGTAATTCCAGACCTTTTGGATGAGACTTGAGGAGGATTTTGGTTTTTCGA-GTTT 720 |||||||||||||||||||| | ||||||||||||||||||||||||||||| | |||| Sbjct 713 TGAAAGTAATTCCAGACCTTGTAGATGAGACTTGAGGAGGATTTTGGTTTTTTGTTGTTT 772 Query 721 CCTCGAGGTAAAATTTTTCTTGAGACATAAGAAAACATCTTTGTATGTTGACCTACC-AT 779 |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 773 CCTCAAGGTAAAAATTTTCTTGAGACATAAGAAAACATCTTTGTATGCTGACCTACCCAT 832 Query 780 AAAGCGTATATATTCATGGTTTATTATGGGC 810 ||||||||||||||||||||| ||||||||| Sbjct 833 AAAGCGTATATATTCATGGTTAATTATGGGC 863 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39433805395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5