BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480017
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25120.1 | Symbols: | Mitochondrial import inner membrane t... 996 0.0
> AT3G25120.1 | Symbols: | Mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein | chr3:9149544-9151123
REVERSE LENGTH=866
Length=866
Score = 996 bits (539), Expect = 0.0
Identities = 606/639 (95%), Gaps = 2/639 (0%)
Strand=Plus/Plus
Query 1 GATTCACAACACCGCATTGAAATTGGAG-TCTCTC-AAGTTCCGTGGCGTCAAAAATGGC 58
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1 GATTCACAACACCGCATTGAAATTGGAGTTCTCTCGAAGTTCCGTGGCGTCAAAAATGGC 60
Query 59 GTCAGGTGATCGGGAATCTCCAGATCGAACGAATCAACCGTTGTCTCCTCCAACGCCGAT 118
|| ||||||||| |||| ||||| | ||| ||||| |||| |||||||| ||||| ||
Sbjct 61 GTTGGGTGATCGGAAATCCCCAGAACAAACAAATCAGGCGTTATCTCCTCCGACGCCTAT 120
Query 119 TGTGCAAGAAAACGGAACTCCGACGAAGCGTGTGTTGATCACTTCCCTTTTAGCAGGAGT 178
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTGCAGGAAAATGGAACTCCGACGAAGCGTGTGTTGATCACTTCCCTTTTAGCAGGAGT 180
Query 179 AATTGGTGGAGGAGCTGGTTTAGTGTCTAAACACCGGATAGCTCATCCCAATATTCCTAC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATTGGTGGAGGAGCTGGTTTAGTGTCTAAACACCGGATAGCTCATCCCAATATTCCTAC 240
Query 239 TGTTTACGCTACTAATTGTGCTATTGTCGCTGGTTGCTATTGCGGAGCTCGTGAATCTGT 298
|||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TGTTTACGCTGCTAATTTTGCTATTGTCGCCGGTTGCTATTGCGGAGCTCGTGAATCTGT 300
Query 299 GAGAATAACTCGAAGATCAGAACACGATGATTTAATGAACTCAGCTATTGGAGGACTTTT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGAATAACTCGAAGATCAGAACACGATGATTTAATGAACTCAGCTATTGGAGGACTTTT 360
Query 359 CAGTGGTGCTTTGCTTGGACGACTTCAAGGAGGTCCTCAGGGTGCGATTCGCTACTCTCT 418
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 TAGTGGTGCTTTGCTTGGAAGACTTCAAGGAGGTCCTAAGGGTGCGATTCGCTACTCTCT 420
Query 419 AGTTTTTGCTGCTGTAGGCACAGCATTTGATTATGCTTCCCTTAAAGCAAAACCAATGTT 478
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 421 AGTTTTTGCTGCTGTAGGCACAGCATTTGATTATGCTACCCTTAAAGGAAAACCAATGTT 480
Query 479 AGAGAGCTACCGTAACATGGAGTCGTTCAAATTACCTGAATGGTCTCCTATTAAAATCCT 538
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 481 AGAGAGCTACCGTAACATGGAGTCATTCAAGTTACCTGAATGGTCTCCTATTAAAGTCCT 540
Query 539 CGACGAAGAAGCCTTAGCAAAGAAGAAAGCTCAGGAAGAGAAAATATTCCCCGAAAGAGT 598
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 541 CGACGAAGAAGCCTTAGCAAAGAAGAAAGCTCATGAAGAGAAGATATTCCCTGAAAGAGT 600
Query 599 CCTCGGCAAATTAAACAAGGAATAGTCTTGACCAACTTA 637
|||||||||||| ||||| |||||||||| |||||||||
Sbjct 601 CCTCGGCAAATTGAACAAAGAATAGTCTTAACCAACTTA 639
Score = 222 bits (120), Expect = 4e-57
Identities = 141/151 (93%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 662 TGAAAGTAATTCCAGACCTTTTGGATGAGACTTGAGGAGGATTTTGGTTTTTCGA-GTTT 720
|||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||||
Sbjct 713 TGAAAGTAATTCCAGACCTTGTAGATGAGACTTGAGGAGGATTTTGGTTTTTTGTTGTTT 772
Query 721 CCTCGAGGTAAAATTTTTCTTGAGACATAAGAAAACATCTTTGTATGTTGACCTACC-AT 779
|||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 773 CCTCAAGGTAAAAATTTTCTTGAGACATAAGAAAACATCTTTGTATGCTGACCTACCCAT 832
Query 780 AAAGCGTATATATTCATGGTTTATTATGGGC 810
||||||||||||||||||||| |||||||||
Sbjct 833 AAAGCGTATATATTCATGGTTAATTATGGGC 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5