BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480018
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1892 0.0
> AT3G25130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits
to 2658 proteins in 280 species: Archae - 12; Bacteria -
208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11;
Other Eukaryotes - 2314 (source: NCBI BLink). | chr3:9152404-9153871
FORWARD LENGTH=1468
Length=1468
Score = 1892 bits (1024), Expect = 0.0
Identities = 1204/1289 (93%), Gaps = 19/1289 (1%)
Strand=Plus/Plus
Query 1 TTTTTTCTGCAAACATGTCTGAAGTTGCCTTGTCATCTCAAGAAGAGAGTACTCCAAGTA 60
||||||||||||||||||||||| |||| ||||||||||||| | ||||| |||||||||
Sbjct 17 TTTTTTCTGCAAACATGTCTGAACTTGCATTGTCATCTCAAG-A-AGAGT-CTCCAAGTA 73
Query 61 GGAAGAAGATTGGtttatcttctcttcttctctctgattttcatctcttttgctcattta 120
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 74 GTAATAAGATTGGTTTATCTTCTCTTCTTCTCTCTGACTTTCATCTCTTTTGCTCATTTA 133
Query 121 tcttctctcaccctttctatttttcttacttgctcttcttatcaccttacatcttcaaga 180
|| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 134 TCCTCACTCACCCTTTCTATTTTTCTTACTTGCTCTTCTTTTCACCTTACATCTTCAAGA 193
Query 181 ttctctcttttctttcACCACTCTTTGTCACCACCACACTCTTGATTCTCGCTTTACTCA 240
|||||||||||||||||||||||||||||||||||||||||||| |||| || ||| | |
Sbjct 194 TTCTCTCTTTTCTTTCACCACTCTTTGTCACCACCACACTCTTGCTTCTTGCCTTATTGA 253
Query 241 GTACTTTGCATGTTCACGAGACTTGTCTTGACTCTGAATCACTAGAAACACAACCAAGCT 300
||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 254 GTACTTTACATGTTCAAGACACTTGTCTCGACTCTGAATCACTAGAAACACAACCAAGCT 313
Query 301 TCCTTTTCTCCTTTTGTAGTAAGCTTGGTAGTGTCTTGGAACACAAGTTTGATGTCGAAG 360
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 314 TCCTTTTCTCCTTTTGTAGTAAGCTTGGAAGTGTCTTGGAACACAAGTTTGATGTC-AAC 372
Query 361 A-TGAGGGTTTTAAGTCATTGGAAGACCTGGAAGCGTATAAGATGGTCGTTGAGGCGTGT 419
| ||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||
Sbjct 373 AATGAGGGTTTTAAGTCATTGGAGGAGTTGGAAGCGTATAAGATGGTCGTCGAGGCTTGC 432
Query 420 TCGATAGAACGTGCGTCCGATAATGAGATATGTTCCGATGAATTAACGTTTGTTGACAAA 479
||||| ||| |||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 433 TCGATGGAATGTGCGTCCGAGAATGAGATATGTTCGGATGAATTGACGTTTGTTGACAAA 492
Query 480 TTCTGTAGCCATGAGAGCACGGTGTCGGAAGCTTTGACCGATGAGACCCGTGAGGAGCAA 539
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 493 TTCTGTAGCCATGAGAGCACGGTGTCGGAATCTTTGACCGATGAGACCCTTGAGGAGCAA 552
Query 540 GTTGAGATCCAACCGTTGAAGTTTGTGGATGTGATTGTTTTGGagaaagaagaagaaacc 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 553 GTTGAGATCCAACCGTTGAAGTTTGAGGATGTGATTGTTTTGGAGAAAGAAGAAGAAACC 612
Query 600 aagaaatgtgaaaaggaagaagaagaggaacaaaaagtcaagccagaaa-gTGACGTTGT 658
|||||||||||||||||||||| ||| |||||||||||||||| | ||| ||||||||||
Sbjct 613 AAGAAATGTGAAAAGGAAGAAGTAGAAGAACAAAAAGTCAAGC-ATAAAAGTGACGTTGT 671
Query 659 CCTCGATAAT-GAAGAAGAGCCGACAAAAGAAGAATCCAAAGCTCAAAAAGTTGACCTTG 717
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 CCTCGATAACAGA-GAAGAGCCGACAAAAGAAGAATCCAAAGCTCAAAAAGTTGACCTTG 730
Query 718 TCGGAGATTTTAATAATGAAAGTTATGATCTCCCAAAACTGAGCAAGTTTCTCGGAGAAG 777
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 731 TCGGAGATAGTAATAATGAAAGTTATGATCTCCCAAAACTGAGCAATTTTCTCGGAGAAG 790
Query 778 G------TAAAAGAAATGAAGCAACTAAAAAGGAAGAAGAAGATAACGTTTCTCTCCAAA 831
| ||||||||||| || ||||| || |||||||||||||| |||||||||||||
Sbjct 791 GAGAAGGTAAAAGAAATGTAGTGACTAAGAACGAAGAAGAAGATAATGTTTCTCTCCAAA 850
Query 832 GCTTTGGATCAATGAGAAAAGAGAAAGAATGGAGGAGAACATTAGCTTGCAAGCTATTCG 891
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 851 GCTTTGGATCAATGAGAAAAGAGAAAGAATGGAGGAGAACATTGGCTTGCAAGCTATTTG 910
Query 892 AAGAAAGACACAATGCTGACGTTGGACAAGGCATGGATCAGCTGTGGGAGACATACGAGA 951
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 911 AAGAACGACACAATGCTGACGTTGGACAAGGCATGGATCAGCTGTGGGAGACTTACGAGA 970
Query 952 CACAAACagagaagaagcatcaaactgaagaagagaagaagaagttcaagaagaagacaa 1011
||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |
Sbjct 971 CACAAACAGAGAAGAAGCAGCAAACCGAAGAAGAGAAGAAGAAGCTCAAGAAGAAGACGA 1030
Query 1012 agtcgatgatgaagactaagagtatagagaaggaagtAATAGTGGAGGAGGAAGATCATG 1071
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct 1031 AGTCGATGATGAAGACAAAGAGTATAGAGAAGGAAGTTATAGTGGAGGAGGAAGAT---G 1087
Query 1072 ATGATGGGATTGATCATCAACAACTTTGTTGTTTACAGGCTTTGAAGTTCTCAACAGGGA 1131
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1088 ATGATGGGATTGATCATCAGCAACTTTGTTGTTTACAAGCTTTGAAGTTCTCAACAGGGA 1147
Query 1132 AGATGCATATGGGAATTGCGAGGCCTAACCTTCTAAAGCTATCTAAGGCTTTCAAAGGCA 1191
|||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1148 AGATGCATTTGGGAATTGCGAGGCCTAACCTTTTGAAGCTATCTAAGGCTTTCAAAGGCA 1207
Query 1192 TTGGAAGGTTTTACAATGCTAACAAACATTCCAAGAAAGCTTGAAAAGAAGATGAATAAT 1251
||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1208 TTGGACGTTTTTACAATGCTAACAAACATTCCAAGAAAGCTTGAAAAGGAGATGAATAAT 1267
Query 1252 AAA-CTTTGTATTAATTTCGATCTATAAA 1279
||| ||||||||||||| ||||||||||
Sbjct 1268 AAAACTTTGTATTAATTGGGATCTATAAA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5