BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480028
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25190.1 | Symbols: | Vacuolar iron transporter (VIT) famil... 1212 0.0
> AT3G25190.1 | Symbols: | Vacuolar iron transporter (VIT) family
protein | chr3:9174457-9175776 FORWARD LENGTH=870
Length=870
Score = 1212 bits (656), Expect = 0.0
Identities = 748/792 (94%), Gaps = 7/792 (1%)
Strand=Plus/Plus
Query 1 ATCAATCAAAATCAAGTAAGCATCACTACTTAGTACTAGTTCCAAACCATGGCTTCCAAC 60
||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 1 ATCAATCAAGATCAAGTAAGCATCACTACTTTGTACTAAATCCAAACCATGACTTCCAAC 60
Query 61 GTTCAGCTTTCAGAAACAAGCAGCCCAAGGAGTCAGAAAAACTGTCCGAGAGTAGAGAAG 120
||||||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||||
Sbjct 61 GTTCAGCTTTCAGAAACAAACAGCCCAAGGAATCAGAAAACCCGTCCGAGAGCAGAGAAG 120
Query 121 GAGGAAGTGGACTACATGCAGAGAGCTCAGTGGCTAAGAGCTGCCTTGCTCGGAGCCAAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GAGGAAGTGGACTACATGCAGAGAGCTCAGTGGCTAAGAGCTGCCTTGCTTGGAGCCAAC 180
Query 181 GATGGTCTGGTCACAGTTGCTTCGCTAATGATGGGTGTTGGTTCTATCAAAGAAGACGTC 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATGGTCTGGTCACAGTCGCTTCGCTAATGATGGGTGTTGGTTCTATCAAAGAAGACGTC 240
Query 241 AAAGCAATGCTTCTTGTTGGTTTTGCCGGCCTTGTAGCGGGTGCTTGTAGTATGGCTATT 300
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 241 AAAGCAATGCTTCTCGTTGGTTTTGCTGGCCTTGTTGCGGGTGCTTGTAGTATGGCTATT 300
Query 301 GGAGAGTTTGTGTCTGTATGCACCCAAAGGGATATTGAAACTGCGCAGATGAAGAGAGCT 360
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GGAGAGTTTGTGTCTGTGTGCACCCAAAGGGATATTGAAACTGCACAGATGAAGAGAGCT 360
Query 361 ATTGAGA-ATAAGACATCATTATCAGAAATCGACGAACAAGAGGAGGAGGAGAAGAAAGA 419
||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 361 ATTGA-ACATAAGACATCACTATCAGCAATCGACGAACAAGAGGAGGAGGAGAAGAAAGA 419
Query 420 ACGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCAGCGTTAGCGTTTTCTGTGGGTGC 479
| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 420 AAGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCGGCGTTAGCGTTTTCAGTGGGTGC 479
Query 480 AGCAATGCCGCTTTTGGCCGCTGTATTCATAGAGAATCATAAGGTAAGAATGGTTGTGGT 539
||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 AGCAATGCCGCTTCTGGGCGCTGTATTCATAGAGAATCATAAGGTAAGAATGGTGGTGGT 539
Query 540 AGCGATTGTGGCCACCATAGCATTAGTTGTGTTTGGAGTGACCGGTGCGGTCTTGGGAAA 599
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 540 AGCGGTTGTGGCCACCATAGCATTGGTTGTGTTTGGAGTGACTGGTGCGGTCTTGGGAAA 599
Query 600 GACAAGTGTGGCTAAGTCGAGCGTTAGAGTGGTGATTGGTGGTTGGATGGCTATGGCTCT 659
||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 600 GACAAGTGTGGTTAAGTCGAGCGTCAGGGTGGTGATTGGTGGTTGGATGGCTATGGCTCT 659
Query 660 TACCTTTGGTCTCACTAAGTTCATTGGCTCCGCAGCCATGCAAATTTAGAGGCTCTTT-A 718
||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 660 TACCTTTGGTCTCACCAAGTTCATTGGCTCTGCAGCCATGCAAATCTAGAGGCTCTTTCA 719
Query 719 TGTGGTCTTCTTGTTTCCATGCATCCCAA-TCAGTGTTCCGTTATGTTTGTATTCTAATC 777
||||||| ||| |||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 720 TGTGGTC--CTTCTTTCCATGCATCACAACT-AGTGTTCCGTTATGTTTGTATTCTAATC 776
Query 778 ATCACACAATCT 789
||||||| ||||
Sbjct 777 ATCACACTATCT 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5