BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480033
Length=1901
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25230.2 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1... 2712 0.0
> AT3G25230.2 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP
1 | chr3:9188181-9191419 FORWARD LENGTH=2009
Length=2009
Score = 2712 bits (1468), Expect = 0.0
Identities = 1722/1840 (94%), Gaps = 36/1840 (2%)
Strand=Plus/Plus
Query 33 CGACGACGACGACATGGATTTCGGTGACGCCGCATCGTTTCTTAAAGTCGGTGAAGAGAA 92
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 118 CGACGACGACGACATGGATTTCGGTGACGGCGCCTCGTTTCTTAAAGTCGGTGAAGAGAA 177
Query 93 AGAGATCCAACAAGGTTTGAAGAAGAAGCTTGTTAAAGAAGGTGAAGGATATGAGACTCC 152
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 178 AGAGATCCAACAAGGTTTGAAGAAGAAGCTTCTTAAAGAAGGTGAAGGATATGAAACTCC 237
Query 153 TGAGAATGGCGATGAAGTTGAAGTGCATTACACTGGGACTTTGCTTGATGGGACGAAGTT 212
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 238 TGAGAATGGCGATGAAGTTGAAGTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTT 297
Query 213 TGATTCGAGTCGTGATAGAGGAACACCTTTTAAATTCACTCTTGGACAAGGTCAGGTTAT 272
|||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||
Sbjct 298 TGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAGGTCAAGTTAT 357
Query 273 TAAAGGATGGGATATTGGTATTAAGACAATGAAGAAAGGTGAAAACGCTGTATTCACTAT 332
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 358 TAAAGGATGGGATATTGGTATTAAGACGATGAAGAAAGGTGAAAACGCTGTTTTCACTAT 417
Query 333 TCCTTCGGAGCTAGCTTATGGGGAATCTGGTTCGCCGCCGACAATTCCTGCGAATGCCAC 392
||| |||||||||| ||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 418 ACCTGCGGAGCTAGCATATGGGGAATCTGGTTCCCCGCCAACTATTCCTGCGAATGCTAC 477
Query 393 GCTTCAGTTTGATGTGGAGTTGCTTACATGGGTTAGTGTGAAGGATATATGTAAAGATGG 452
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 478 GCTTCAGTTTGATGTGGAGTTGCTTAAATGGGACAGTGTGAAGGATATATGTAAAGATGG 537
Query 453 TGGTGTGTTTAAGAAGATTCTTGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGATCTTGA 512
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 538 TGGTGTGTTTAAGAAGATTCTTGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGA 597
Query 513 TGAAGTTCTTGTTAAGTTCGAGGCTAAACTTGAGGATGGCACGGTTGTTGGGAAATCTGA 572
|||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||
Sbjct 598 TGAAGTTCTTGTTAAGTTTGAGGCGAAACTTGAGGATGGTACTGTTGTTGGGAAATCTGA 657
Query 573 TGGTGTAGAGTTCACTGTTAAAGATGGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAA 632
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TGGTGTGGAGTTCACTGTTAAAGATGGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAA 717
Query 633 AACCATGAAAAAGGGTGAAAAGGTCCTTTTGACAGTTAAACCACAATATGGTTTTGGGGA 692
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 AACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATATGGTTTTGGGGA 777
Query 693 GAAGGGCAAGCCAGCCTCTGCTGGTGAAGGTGCGGTTCCTCCTAATGCGACACTTGAGAT 752
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 778 GAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTTCCTCCTAATGCGACGCTCGAGAT 837
Query 753 CAATCTGGAGTTAGTTTCATGGAAAACAGTTTCAGAAGTAACTGATGATAACAAGGTTAT 812
|||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
Sbjct 838 CAATTTGGAGTTAGTTTCGTGGAAAACAGTGTCAGAAGTAACTGATGATAACAAGGTTGT 897
Query 813 GAAGAAAATCTTGAAGGAAGGGGAAGGATATGAGCGTCCTAACGAGGGGACAGTTGTGAA 872
||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 898 GAAGAAAGTCTTGAAGGAAGGGGATGGATATGAGCGTCCTAACGAGGGGGCAGTTGTGAA 957
Query 873 AGTGAAATTGATAGGGAAACTTCAAGATGGTACTGTATTTTTGAAGAAAGGTCACGGTGA 932
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 958 AGTGAAATTGATAGGGAAACTTCAAGATGGTACTGTATTTTTGAAGAAAGGTCATGGTGA 1017
Query 933 GAATGAAGAACCGTTTGAGTTCAAAACAGATGAAGAGCAAGTGGTCGATGGACTTGATAG 992
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1018 GAATGAGGAACCGTTTGAGTTCAAAACAGATGAAGAGCAAGTTGTCGATGGACTTGATAG 1077
Query 993 AGCTGTCATGAAGATGAAAAAGGGTGAAGTGGCATTGGTGACCATAGACCCCGAGTATGC 1052
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1078 AGCTGTCATGAAGATGAAAAAGGGTGAAGTGGCATTGGTGACCATAGACCCTGAGTATGC 1137
Query 1053 CTTTGGTGCTAATGAGTCACAACAGGAGTTGGCTGTGGTGCCGCCAAACTCAACCGTTAC 1112
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1138 CTTTGGTTCTAATGAGTCACAACAGGAATTGGCTGTGGTGCCGCCAAACTCAACTGTTAC 1197
Query 1113 TTATGAGGTTGACCTATTGACTTTCGACAAGGAAAGGGAATCGTGGGACATGAACACTGA 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTATGAGGTTGACCTATTGACTTTCGACAAGGAAAGGGAATCGTGGGACATGAACACTGA 1257
Query 1173 GGAGAAGATAGAAGCTGCTAGTAAGAAGAAGGAAGAAGGAAATTCCAAGTTTAAAGCAGG 1232
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1258 GGAGAAGATTGAAGCTGCTAGTAAGAAGAAGGAAGAAGGAAATTCCAAGTTTAAAGGAGG 1317
Query 1233 CAAATATGCGCTGGCTTCCAAGAGATACGAGAAGGCTGTCAAATTCATTGAATACGACAC 1292
||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1318 CAAATATTCCCTGGCTTCCAAGAGATATGAGAAGGCTGTCAAATTCATTGAATACGACAC 1377
Query 1293 ATCCTTCAGTGAGGAAGAGAAGAAGCAAGCAAAAGCATTGAAGGTGGCATGCAATCTAAA 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATCCTTCAGTGAGGAAGAGAAGAAGCAAGCAAAAGCATTGAAGGTGGCATGCAATCTAAA 1437
Query 1353 CGATGCAGCCTGCAAACTCAAATTGAAAGATTACAAGCAGGCTGAAAAATTGTGCACAAA 1412
|||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 1438 CGATGCAGCCTGCAAACTCAAATTGAAAGATTACAAGCAGGCCGAAAAACTATGCACAAA 1497
Query 1413 GGTGTTAGAGCTAGAAAGCACCAATGTGAAGGCCTTATACAGGAGAGCGCAAGCGTACAT 1472
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1498 GGTGTTAGAGCTAGAAAGCACCAATGTGAAGGCCTTATACCGGAGAGCGCAAGCGTACAT 1557
Query 1473 GGAGATGGCTGATTTAGACTTGGCTGAGTTTGATGTCAAGAAGGCCCTTGAAATTGATCC 1532
|||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1558 GGAGTTGTCTGATTTAGACTTGGCCGAGTTTGATGTCAAGAAGGCCCTTGAAATCGATCC 1617
Query 1533 AAACAACAGGGAAGTGAAGCTGGAGCAGAGAAGGTTGAAGGAGAAAATGAAGGAATTCAA 1592
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1618 CAACAACAGGGAAGTGAAGCTAGAGCAGAAAAGGTTGAAGGAGAAAATGAAGGAATTCAA 1677
Query 1593 CAAAAAGGAAGCCAAATTTTATGGAAACATGTTTGCGAAATTAACTGTAAGTATATATCT 1652
||||||||||||||||||||||||||||||||||||||| || ||| | |||
Sbjct 1678 TAAAAAGGAAGCCAAATTTTATGGAAACATGTTTGCGAAA----CT--AAG-A-ATA--- 1726
Query 1653 CTAAAAGGAATCATCAAAAGATGGAGAAGCAATGAGCACCTGAG-TCTTGAAAACGTTCC 1711
| ||| ||| |||||||| |||||||||||||||| ||||||||||||| |
Sbjct 1727 --A-------TCA--AAA-GATGGAGAGGCAATGAGCACCTGAGGTCTTGAAAACGTTGC 1774
Query 1712 AAGAACTCTGCAtttt-cagtttcttgcttcttttggtttgttgcaatgtttttcttagt 1770
|||||||||||||||| || ||||| || ||||||||||||||||||||||| || |||
Sbjct 1775 AAGAACTCTGCATTTTTCATTTTCTA-CT-CTTTTGGTTTGTTGCAATGTTTT-CT-AGT 1830
Query 1771 ttttcGTCCTGAGCTTTAATGAGAGA-TAACA-TTGGATTTCAGTTAGTGATTAATCGCA 1828
||||| ||||||| ||| ||||| | ||| | || | |||| || ||||| || ||
Sbjct 1831 TTTTCAACCTGAGCGTTAGTGAGACACTAAGACTTATAAAACAGTGAGAGATTA-TCCCA 1889
Query 1829 -TGTGTTGtttttttCGTCT-AGTTGTTGGTAGAAAACTT 1866
||||||| ||||||||||| | ||||||||||||| |||
Sbjct 1890 ATGTGTTGCTTTTTTCGTCTGA-TTGTTGGTAGAAA-CTT 1927
Score = 69.4 bits (37), Expect = 1e-10
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1862 AACTTTCAAGATTAATTTGAGTTCTTAATATGATATCGAG 1901
||||||| ||||||||||||||||||||||||||||||||
Sbjct 1954 AACTTTCCAGATTAATTTGAGTTCTTAATATGATATCGAG 1993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94126021875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5