BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480035
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25260.1 | Symbols: | Major facilitator superfamily protein... 2872 0.0
> AT3G25260.1 | Symbols: | Major facilitator superfamily protein
| chr3:9199438-9202000 FORWARD LENGTH=1940
Length=1940
Score = 2872 bits (1555), Expect = 0.0
Identities = 1728/1811 (95%), Gaps = 13/1811 (1%)
Strand=Plus/Plus
Query 1 TTAATCTAAGAGA-ACAAAGAGATGCAGGTTGAGATTGAAGAGAAGTTTGAAGATTGGAG 59
||||||||||| | || ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 136 TTAATCTAAGA-ATACGAAGAGATGCAGATTGAGATGGAAGAGAAGTTTGAAGATTGGAG 194
Query 60 AGGTAGAGAGGCAATTTCTGGCAAACATGGTGGGATTAAAGCTGCTTTCATTGCTTGTGT 119
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 AGGCAAAGAGGCAATTTCTGGCAAACATGGTGGGATTAAAGCTGCTTTCATTGCTTGTGT 254
Query 120 TGTGGAGACGATGGAGAATATGGTGTTCTTAGCATATTCAACCAACTTCATGATGTACTT 179
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 255 TGTAGAGACGATGGAGAATATGGTGTTCTTAGCATGTTCAACCAACTTCATGATGTACTT 314
Query 180 TACAAAATCAATGAATTACTCATCACCCAAAGCAGCAACCATGGTAACTAATTTCATAGG 239
||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 315 TACGAAATCAATGAATTACTCAACACCCAAAGCAGCAACCATGGTGACTAATTTCGTAGG 374
Query 240 AACATCCTTTTTGCTCACTATTTTCGGTGGTTTTGTTGCGGACTCTTTTCTCACTCGCTT 299
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 375 GACATCGTTTTTGCTCACTATTTTCGGTGGTTTTGTCGCGGACTCTTTTCTCACTCGCTT 434
Query 300 CGCCT-CTTTCGTCCTCTTTGGTTTCATTGAACTCCTGGGTTTGATCTTGTTGACACTCC 358
|| || |||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 435 CG-CTGCTTTCGTCCTCTTTGGTTCCATTGAACTCCTGGGTTTGATCATGTTGACACTCC 493
Query 359 AAGCTCATATCACTAAGTTACAACCTCAAGGAGGTAAAAAACCTTCGACTCTTCAATCAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 494 AAGCTCATATCACTAAGTTACAACCTCAAGGAGGTAAAAAACCTTCGACTCCTCAATCAA 553
Query 419 CGGTTCTATTCACCGGACTTTATGCAATAGCTATTGGTGTTGGAGGTGTCAAGGGGTCGT 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 CGGTTCTATTCACTGGACTTTATGCAATAGCTATTGGTGTTGGAGGTGTCAAGGGGTCGT 613
Query 479 TGCCTGCTCATGGAGGCGACCAGCTTGGTACTAGAAACCAGAGGCTGATCTCAGGATTCT 538
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 614 TGCCTGCTCATGGAGGCGACCAGATCGGTACTAGAAACCAGAGGCTGATCTCAGGATTCT 673
Query 539 TCAATTGGTATTTCTTCTCTGTCTGCCTTGGAGGTTTCTTGGCCGTAACCCTTATGGTTT 598
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 674 TCAATTGGTATTTCTTCTCTGTCTGCCTTGGAGGTTTCTTGGCAGTAACACTTATGGTTT 733
Query 599 GGATCGAGGAGAACAAAGGATGGAGCTCAAGCTTCAATATTTCTACCGCGGTTTTAGCCT 658
||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||
Sbjct 734 GGATCGAGGAGAACATAGGATGGAGCTCCAGCTTCACTATATCTACCGCGGTTTTAGCCT 793
Query 659 CTGCGATCTTCATTTTCGTTGTGGGATGCCCGATGTATCGATTCAAGCGTCCAGCAGGAA 718
||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| |
Sbjct 794 CTGCGATCTTCGTTTTCGTTGCGGGATGCCCGATGTATCGATTCAAGCGCCCAGCAGGGA 853
Query 719 GTCCTCTGACCAGAATTGTGAATGTGTTTGCTTCTGCCACAAGAAACCGAAATAGGTTTG 778
||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 854 GTCCTTTGACCAGAATTGTGAATGTGTTTGTTTCTGCCGCAAGAAACCGAAATAGGTTTG 913
Query 779 TAACGGATGCAGA---GGTGACACAGAATCATACCTCTACCGACAAAAGCATTCATCACA 835
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 914 TAACGGATGCAGAGGTGGTGACACAGAATCATAACTCTACCGACAAAAGCATTCATCACA 973
Query 836 ACAAGTTCAAGTTTTTGAATAAAGCAAAGCTCAACAACAAGATCTCTGCAACACAAGTTG 895
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 974 ACAAGTTCAAGTTTTTGAATAAAGCAAAGCTCAACAACAAGATATCAGCAACACAAGTTG 1033
Query 896 AAGAAACAAGAACGTTTCTAGCTCTTCTACCAATATTTGCGAGCACAATTGTAATGAACT 955
||||||||||||||||||||||||| || |||||||||| |||||||||| |||||||||
Sbjct 1034 AAGAAACAAGAACGTTTCTAGCTCTCCTTCCAATATTTGGGAGCACAATTATAATGAACT 1093
Query 956 GTTGCGTCGCACAAATGGGAACCTTCTCCGTTCAACAAGGCATGGTGACAAACAGAAAAC 1015
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 GTTGTGTCGCACAAATGGGAACCTTCTCCGTTCAACAAGGCATGGTGACAAACAGAAAAC 1153
Query 1016 TCTCGCGTTCCTTTGAGATCCCCGTGGCTTCCCTCAATGCCATTCCTCTACTGTGCATGC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 TCTCGCGTTCCTTTGAGATCCCCGTGGCTTCCCTCAATGCCATTCCTCTACTGTGCATGC 1213
Query 1076 TCTCTTCTTTAGCTTTATTCGAGCTTTTCGGCAAAAGGATCATATCCAATAGCGAAAGAT 1135
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1214 TCTCTTCTTTAGCTTTATACGAGCTTTTCGGCAAAAGGATCTTATCCAATAGCGAAAGAT 1273
Query 1136 CGTCCAGCTTCAATTTGAAACGTATAGGATCCGGTTTAGCTCTCACTTCTGTTTCAATGG 1195
|||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||
Sbjct 1274 CGTCCAGCTTCAATTTGAAACGTATAGGATACGGTTTAGCTCTCACCTCTATTTCAATGG 1333
Query 1196 CGGTTGCATCCATGGTAGAGGTCAAGAGAAAACATGAAGCGGTTCACAACAACATCAAAA 1255
|||||||| |||| || |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1334 CGGTTGCAGCCATCGTGGAGGTCAAAAGAAAACATGAAGCGGTTCACAACAACATCAAGA 1393
Query 1256 TTTCTGTGTTCTGGTTAGAGCTTCAATTTGTTTTGTTGAGTTTCTCGGATATGTTGACTG 1315
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1394 TTTCTGTGTTCTGGCTAGAGCTTCAATTTGTTATGTTGAGTCTCTCGGATATGTTGACTG 1453
Query 1316 TTGGAGGAATGTTAGAGTTCTTCTTTAGGGAATCTCCAGCGAGTATGAGGAGCATGAGCA 1375
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1454 TTGGAGGAATGTTAGAGTTCTTCTTTAGAGAATCTCCAGCGAGTATGAGGAGCATGAGCA 1513
Query 1376 CCGCGTTAGGGTGGTGCTCCACCGCAATGGGTTTCTTCCTCAGCTCGGTTCTTGTTGAGG 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1514 CCGCGTTAGGGTGGTGCTCCACCGCAATGGGTTTCTTCCTCAGCTCGGTTCTTGTGGAGG 1573
Query 1436 TCGTTAATGGCATCACGGGATGGCTCCGCGATGATCTTAATGAGTCGAGGCTCGAACTGT 1495
| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1574 TTGTTAATGGCATCACGGGATGGCTCCGCGACGATCTTAATGAGTCCAGGCTCGAACTAT 1633
Query 1496 TTTATGTGGTTTTATGTGTTCTTAATACCCTTAATCTTTTTAATTATATTTTCTGGGCGA 1555
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 TTTATTTGGTTTTATGTGTTCTTAATACCCTTAATCTTTTTAATTATATTTTCTGGGCGA 1693
Query 1556 AAAGATATTAGGCAAAAGAACAAAGTATGTTGTCTTGTCTATAGAGAACTCCTTAATTTA 1615
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1694 AAAGATATTAGGCAAAAGAACAAAGTATGTTGCCTTGTCTATAGAGAACTCCTTAATTTA 1753
Query 1616 GGTAAGTTGCTATGCATGTAGTGGAAGTCTAAACCAAGTAATTAAGTTGCGTAATGGttt 1675
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1754 GGTAAGATGCTATGCATGTAGTGGAAGTCTAAACCAAGTAA----GTTGCGTAATGGTTT 1809
Query 1676 tttttGTGTGTGGTGGTTTTCAAGTTGGTTGATGTGTCATGTAATAATGGGAAGAAATAG 1735
|||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1810 TTTTTGTGTG-G-TGGTTTTCAAGTTGGTTGATGTGTCATGTAATAATGGGAGGAAATAG 1867
Query 1736 TTACTACCCCATTTAAGTTTCATAATTTGTGATTCTACCAAAATTAAGAAAGTGTGAAAG 1795
||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| |
Sbjct 1868 TTACTACCCCATTTAAGTTTCATAATTTGTGATTCTACCTAATTTAAGAAACTATGAACG 1927
Query 1796 TGACATTTTCT 1806
| |||||||||
Sbjct 1928 TAACATTTTCT 1938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89356970100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5