BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480039
Length=566
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25400.1 | Symbols: | CONTAINS InterPro DOMAIN/s: NTP Pyrop... 778 0.0
> AT3G25400.1 | Symbols: | CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase
MazG-related, RS21-C6 (InterPro:IPR011394),
EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative
catalytic core (InterPro:IPR004518); Has 1123 Blast
hits to 1121 proteins in 452 species: Archae - 22; Bacteria
- 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other
Eukaryotes - 181 (source: NCBI BLink). | chr3:9213156-9214281
FORWARD LENGTH=643
Length=643
Score = 778 bits (421), Expect = 0.0
Identities = 523/572 (91%), Gaps = 8/572 (1%)
Strand=Plus/Plus
Query 1 TAGGGTTTAAGTCTTTTGTGTAAAAAATCATCGATAATGAAAAAGGGAGAAGAAGGAGGA 60
|||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||||||||
Sbjct 45 TAGGGTTTTAGTCTTTTGTGTAATAATTCATTGATCATGAACAAGGGAGAAGAAGGAGGA 104
Query 61 GAAG--AA-G-A--GGTTTCTCTTCAAACTCTTAGTAAGAAAATGGATGATTTTGCAAAA 114
|||| || | | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 105 GAAGACAAGGAAGTGGTTTCTCTTCAAACTCTGAGTAAGAAAATGGATGATTTTGCAAAA 164
Query 115 GCTAGAGATTGGGAGAAGTATCACAGCCCAAGGAATCTCCTTCTTGCCATGGTGGGTGAA 174
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 165 GCTAGAGATTGGGAGAAGTATCACAGTCCAAGGAATCTCCTTCTTGCTATGGTGGGTGAA 224
Query 175 GTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGGGAAGTGGCTAGAGGATGTCCAGAT 234
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 225 GTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGGATGTCCAGAT 284
Query 235 TGGAAAGAAGAAGAGAAAGTGCATCTTGGAGAAGAGTTATCCGATGTGTTGTTGTATTTG 294
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 285 TGGAAAGAAGAAGAGAAAGTCCATCTTGGAGAAGAGTTATCAGATGTTTTGTTGTATTTG 344
Query 295 GTGAGGCTTTCGGATGCGTGCGGTGTTGATTTAGGCAAAGCGGCTTTGCGCAAGATCGAG 354
|||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||
Sbjct 345 GTGAGGCTTTCGGATGCGTGTGGTGTCGATTTAGGCAAAGCCGCTCTGCGCAAGATCGAG 404
Query 355 CTTAATGCTATTAAGTATCCAGCACCCAAACAGACTGATGATCATTGTGTTGGTGATGGT 414
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 405 CTTAATGCTATTAAGTATCCAGTTCCCAAAAAGACTGATGATCATTGTGTTGGTGATGGT 464
Query 415 GAACATTCCAGCGGCAATATTAAGTTGAATGAAGAACATTAATCTCTCTTGTTAGTGGTT 474
||| |||| ||| |||| |||||||||||||||||| | ||||||||||| |||||||||
Sbjct 465 GAAGATTCAAGCAGCAAGATTAAGTTGAATGAAGAAAACTAATCTCTCTTATTAGTGGTT 524
Query 475 TGGTGAGTGTGTTTTATTATGGGTGTTTTCTTGTAATGAATTTGGAGCAAGAGACAAGAT 534
| |||||| |||| ||| ||||| ||||||||| ||||| | |||||| || |||||
Sbjct 525 TTGTGAGTAAGTTT-ATTGTGGGTATTTTCTTGTTATGAAGTAGGAGCATGAT-CAAGAA 582
Query 535 CATATAATCTTTGAAGGCCTCTAATTATATTT 566
||||||||||| ||||||||||||||||||||
Sbjct 583 CATATAATCTTCGAAGGCCTCTAATTATATTT 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27176673527
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5