BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480040
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25410.1 | Symbols: | Sodium Bile acid symporter family | c... 2314 0.0
> AT3G25410.1 | Symbols: | Sodium Bile acid symporter family |
chr3:9214339-9216490 REVERSE LENGTH=1681
Length=1681
Score = 2314 bits (1253), Expect = 0.0
Identities = 1491/1601 (93%), Gaps = 36/1601 (2%)
Strand=Plus/Plus
Query 23 TCCACGGCGCCATTTCACGGCGGCGCTTCTCCTTC-CTCCGTCGTCTACTCTCCTAAAAA 81
||||||||| |||||||||| |||||||| || || ||||||| |||||||||||||||
Sbjct 68 TCCACGGCGTCATTTCACGGTGGCGCTTCACC-TCTCTCCGTCACCTACTCTCCTAAAAA 126
Query 82 TCCAACCTTTACAAAATTCAGA-CAA-AAAGAGAATGACTTTAATCGCTTCTTTGTCTCT 139
||||| ||||||||||| |||| ||| | ||| ||||||||||||||||||| |||||||
Sbjct 127 TCCAATCTTTACAAAATCCAGACCAATATAGA-AATGACTTTAATCGCTTCTCTGTCTCT 185
Query 140 CCCACCACCAGCTATACAAAGACAATCACTTTC------T-A-AATC-T----C---A-G 182
||||||||||||||||||||||||||||||||| | | |||| | | |
Sbjct 186 CCCACCACCAGCTATACAAAGACAATCACTTTCTGAATTTCATAATCTTCCCGCTAAATC 245
Query 183 T--GT--TTCAATTGTCAATTACGGtcttctagttcatctctctcttctcttcattcttc 238
| | |||||||||||||| ||||||||||||||| || | |||||||| ||||||||
Sbjct 246 TCAATCCTTCAATTGTCAATTCCGGTCTTCTAGTTCACCTTTATCTTCTCTCCATTCTTC 305
Query 239 ATCGCTTAGTAAATTTCTAGATTTTAGACCACGACGGAGAAACGGCGGATTAGTACCAGT 298
|||||||||||| |||||||||||||||| | | ||||||||| ||||||| || |||||
Sbjct 306 ATCGCTTAGTAACTTTCTAGATTTTAGACTAAGGCGGAGAAACAGCGGATTGGTTCCAGT 365
Query 299 GGTGGCGTGTTCAACGACGCCGTTTATGGGTAGAGTTGGATTACATTGGAGAGATGGGAA 358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 366 GGTGGCGTGTTCAACGACGCCGTTTATGGGCAGAGTTGGATTACATTGGAGAGATGGGAA 425
Query 359 TATGTCTCTGTTATCGTTTTGTGGTGGAACTGATGTTACGGAGAAAGCTGATTCGTCTCA 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 426 TATGTCTCTGTTATCGTTTTGTGGTGGAACTGATGTTACAGAGAAAGCTGATTCGTCTCA 485
Query 419 GTTTTGGTCTGCTTTGCTTCCGTTTGTCGTCGCTCTCACCGCCGTTGCTGCTCTCTATTA 478
||||||||||||||||||||| ||||| || |||||||| |||||||||||||||| |||
Sbjct 486 GTTTTGGTCTGCTTTGCTTCCATTTGTTGTTGCTCTCACTGCCGTTGCTGCTCTCTCTTA 545
Query 479 CCCACCTAGTTTCACTTGGGTATCTAAAGAACTCTATGCTCCTGCTCTTGGAGGGATTAT 538
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 546 CCCACCTAGTTTCACTTGGGTATCTAAAGACCTCTATGCTCCTGCTCTTGGAGGGATTAT 605
Query 539 GTTATCTATCGGAATTCAGCTTTCGA-TTGACGATTTTGCTCTTGCATTCAAAAGACCAG 597
||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 606 GTTATCTATTGGAATTCAGCTTTC-AGTTGACGATTTTGCTCTTGCATTCAAAAGACCAG 664
Query 598 TGCCGTTATCTGTTGGGTTTGTTGCTCAGTATGTTTTAAAACCGCTTCTCGGGGTTTTAG 657
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 665 TGCCGTTATCTGTTGGGTTTGTTGCTCAGTACGTTTTGAAACCGCTTCTCGGGGTTTTAG 724
Query 658 TTGCTAATGCCTTTGGGATGCCGAGGACCTTCTACGCTGGTTTTGTACTCACGTGTTGTG 717
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 725 TTGCTAATGCATTTGGGATGCCGAGGACCTTCTACGCTGGTTTTATACTCACGTGTTGTG 784
Query 718 TGGCGGGGGCTCAGTTGTCTAGTTACGCGAGTTCTCTGAGTAAAGCAGATGTGGCCATGA 777
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 785 TGGCTGGGGCTCAGTTGTCTAGTTACGCGAGTTCTCTGAGTAAAGCTGATGTGGCCATGA 844
Query 778 GCATTCTTCTCACTAGTTCTACTACTATTGCATCTGTAATCTTTACGCCTTTGCTAAGTG 837
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||
Sbjct 845 GCATTCTTCTCACTAGTTCTACAACTATTGCTTCTGTAATCTTTACACCTTTGCTTAGTG 904
Query 838 GTCTTCTGATTGGGTCGGTAGTTCCTGTTGATGCAGTTGCCATGTCCAAGTCCATACTTC 897
||||||| ||||| || ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 905 GTCTTCTAATTGGATCAGTAGTTCCTGTTGATGCAGTTGCCATGTCGAAGTCTATACTTC 964
Query 898 AGGTGGTGCTTGTTCCAGTCACTCTTGGCCTTGTGTTAAATACTTATGCGAAGCCTGTGG 957
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AGGTGGTACTTGTTCCAATCACTCTTGGCCTTGTGTTAAATACTTATGCGAAGCCTGTGG 1024
Query 958 TCACTCTTCTTCAACCTGTGATGCCGTTTGTTGCTATGGTATGCACTTCATTGTGCATTG 1017
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1025 TCACTCTTCTTCAACCTGTGATGCCGTTTGTTGCTATGGTATGCACTTCGTTGTGCATTG 1084
Query 1018 GAAGCCCACTTTCGATAAATCGCAGTCAGATTCTGTCAGCTGAAGGTCTCGGATTGATTG 1077
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1085 GAAGCCCACTTTCGATTAATCGCAGTCAGATTCTGTCAGCTGAAGGTCTTGGATTGATTG 1144
Query 1078 TTCCAATTGTTACATTCCATGCCATAGCATTTGTCTTGGGATATTGGTTCTCTAAGATCC 1137
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 1145 TTCCAATTGTTACATTCCATGCCGTAGCATTTGCCTTAGGATATTGGTTCTCTAAGATCC 1204
Query 1138 CAGGCTTACGGCAAGAGGAAGAAGTTAGCCGGACTATCTCCCTTTGCACGGGAATGCAGA 1197
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1205 CAGGCTTACGACAAGAGGAAGAAGTAAGCCGGACTATCTCCCTTTGCACGGGAATGCAAA 1264
Query 1198 GCTCCACATTAGCCGGGCTTCTTGCAAGCCAGTTCCTTGGTAGCAGCCAAGCCGTGCCAG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 GCTCCACATTAGCCGGGCTTCTTGCAAGCCAGTTCCTTGGTAGCAGCCAAGCCGTGCCAG 1324
Query 1258 CAGCTTGCTCTGTGGTTGTAATGGCCATAATGGGTCTATGCCTTGCCTCTTTCTGGGGCA 1317
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 CAGCTTGCTCTGTAGTTGTAATGGCCATAATGGGTCTATGCCTTGCCTCTTTCTGGGGCA 1384
Query 1318 ATGGGTTTCGAATCAGGGATTTTCTGTCGCTATCAACCCCGCAAAGCAGTGGCTACACCG 1377
||||||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||
Sbjct 1385 ATGGGTTTCGAATCAGGGACGTTCTATCGCTATCAACACCGCAAAGCACTGGCTACACCG 1444
Query 1378 CTGAATCATGAGCAATA-TTCAGCCGCAACAAACCTGTAAAGCAAGGGAACC-----TTG 1431
||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||
Sbjct 1445 CTGAATCATGAGCAAGAATTCAGCAGCAACAAACCTGTAAAGCAAGGGAACCACACCTTG 1504
Query 1432 GGACATTGATGGCA-AAC-ACTTTCCGGTTTTTGATTTGTTGTACAAACAGCATTTGGGA 1489
|||||||||| ||| || |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1505 GGACATTGATTGCACAAGTACTTTCCGGTTTTTAATTTGATGTACAAACAGCATTTGGGA 1564
Query 1490 AGTTAAGATAAGGTTTAGAGGGGATGGTATAGGTAGTGTAGACAAAATGGTGTTCATCAA 1549
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1565 AGTAAAGATAAGGTTTAGAGGGGATGGTATAGGTAGTGTAGACAAAATGGTATTCATCAA 1624
Query 1550 TCATCTTGTATGTAATCTGCTAATTCATGGTATAAAAAGTT 1590
|||||||||||||| |||||||||||||||||||||| |||
Sbjct 1625 TCATCTTGTATGTAGTCTGCTAATTCATGGTATAAAAGGTT 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5