BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480041
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25420.1 | Symbols: scpl21 | serine carboxypeptidase-like 21... 2379 0.0
> AT3G25420.1 | Symbols: scpl21 | serine carboxypeptidase-like
21 | chr3:9217832-9220925 FORWARD LENGTH=1607
Length=1607
Score = 2379 bits (1288), Expect = 0.0
Identities = 1465/1549 (95%), Gaps = 18/1549 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTGGTTAGTGGAAGCTATCGTTGCTTCGATATTGTTGTCTTTGTGTTTTGCAATA 60
|||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct 1 ATGGGTCGGTTAGTAGAAGCTATCATTGCTTCGATATTATTGTCTTTGTGTTTTACAATA 60
Query 61 ACAGAGTCAGCTCCAAAATCTGCTCTCATTACCGAA-CTTCCTGGTTTCAACGGAACGTT 119
||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || ||
Sbjct 61 ACAAAGTCAGCTCCAAAATCTGCTCTCATTACC-AATCTTCCTGGTTTCAACGGCACTTT 119
Query 120 TCCATCTAAACACTATGCCGGGTATGTGGCAATAGATAAACATCGTAACAAGAATTTATG 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 120 TCCATCTAAACACTATGCCGGGTATGTGGCAATAGATAAACATCGTAATAAGAATCTATG 179
Query 180 GTATTACTTTGTGGAGTCTGAGAGAAATGCTTCAGTAGATCCAGTTGTGCTTTGGCTTAA 239
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 GTATTACTTTGTGGAATCTGAGAGAAATGCTTCGGTAGATCCAGTTGTGCTTTGGCTTAA 239
Query 240 TGGTGGTCCAGGTTGCTCTAGCATGGATGGATTTGTCTACGAGCACGGTCCATTCAATTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGTGGTCCAGGTTGCTCTAGCATGGATGGATTTGTCTACGAGCACGGTCCATTCAATTT 299
Query 300 CGAACCAAAAAAGA-GAAACTCACATCTTCTGCATCTCAATCCTTATAGTTGGTCCAAGG 358
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 CGAACCAAAAAAGAAGAA-CTCACATCTTTTGCATCTCAATCCTTATAGTTGGTCCAAGG 358
Query 359 TGTCCAACATCATATACCTTGACTCTCCAGTTGGTGTGGGATTCTCTTACTCAAACGACA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 TGTCCAACATCATATACCTTGACTCTCCAGTTGGTGTGGGATTCTCTTACTCAAATGACA 418
Query 419 ACGCCGATTATACAACTAATGATACGAAAACCGCGTTTGATTCTCACAGATTCCTTCTTG 478
||||||||||||||||| ||||||| |||||||||| |||| |||||| ||||||||| |
Sbjct 419 ACGCCGATTATACAACTGATGATACAAAAACCGCGTCTGATACTCACACATTCCTTCTCG 478
Query 479 AGTGGTTTAAAATGTTTCCGGAGTTTCGGTCAAATCCGTTCTTTATATCAGGAGAATCAT 538
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 AGTGGTTTAAAATGTTTCCGGAGTTTCAGTCAAATCCGTTCTTTATATCAGGAGAATCAT 538
Query 539 ATGCTGGTATCTATGTGCCAACTCTTGCGGCCCAGGTTGTCAAAGGTCATAAGAATGTGA 598
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 539 ATGCTGGTATCTATGTGCCAACTCTTGCGGCCGAGGTTGTCAAAGGTCACAAGAATGTGA 598
Query 599 CGACAAAGCCGCTTATCAACTTCAAGGGATACTTGGTGGGTAATGGAGTTACTGATGAGG 658
| | || |||| ||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 599 C-A-AA-GCCGGTTATCAACTTCAAGGGATATTTGGTGGGTAATGGTGTTACCGATGAGG 655
Query 659 TGTTTGATGGTAATGCTCTTGTTCCCTTCACACATGGGATGGGACTCATCTCTGATGAAC 718
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 656 TGTTTGATGGTAATGCTCTTGTTCCCTTCACTCATGGCATGGGACTCATCTCTGATGAAC 715
Query 719 TCTATGAGGAAACTAAATTAGTGTGCAATGGAACATACTATACCGGCGGCCACTCAGGTG 778
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 716 TCTATGAGGAAACTAAATTAGTGTGCAACGGAACATACTATACCGGCGGCCAGTCAGGAG 775
Query 779 TAAGTAAAGAATGTGCTGACAAGCTTAAAAAAGTGTCAGATACTGTGAGCTTATTGAACT 838
| |||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 776 TGAGTAAAGAATGTGCTGGCAAACTTAAAACAGTGTCAGATACTGTGAACTTATTGAACT 835
Query 839 TATATAACATTCTAGAACCGTGCTACCACGGAACATCTCTATCCGCCCTAGATATTGAGT 898
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 836 TATATAACATTCTAGAACCGTGCTACCACGGAACATCTCTATCCGCCTTAGATATCGAGT 895
Query 899 TTCTGCCTAAGAGTCTCCTTACTCTAGGCAAAACAGAAAAGCCAATGGCAGTGAGAAAGA 958
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 896 TTCTGCCTAAGAGTCTCCTTACTCTAGGCAAAACAGAAAAGCCAATGGCGGTGAGAAAGA 955
Query 959 GAATGTTTGGTCGTGCATGGCCTCTAGGGGCCGTTGTGCGTCCAGGCATTGTACCTAGTT 1018
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 956 GAATGTTTGGTCGTGCATGGCCTCTAGGTGCCGTTGTGCGTCCAGGCATTGTACCTAGTT 1015
Query 1019 GGTCTCAACTCCTCGAGGGCTCTGGTGTTCCTTGCATTGACGATACAGTTGCGACCAAAT 1078
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GGTCTCAACTCCTCGCTGGCTTTGGTGTTCCTTGCATTGACGATACAGTTGCGACCAAAT 1075
Query 1079 GGCTAAACGATCCAGCTGTACGGAAAGCGGTTCATGCTAAAGAGGTCTCTACTCTCTCTA 1138
|||||||||||||||||||| |||||||||||||||||||||||||||||| | || |
Sbjct 1076 GGCTAAACGATCCAGCTGTAAGGAAAGCGGTTCATGCTAAAGAGGTCTCTA-T-TC---A 1130
Query 1139 CCCATTTCATCATATTTTTCTTAATAAGCCTTTCGATTGGAAATTGGAAGTTATGCTCAA 1198
||| |||||||||| ||| ||| || ||||||||||||||||| ||||||| ||||
Sbjct 1131 ---ATT-CATCATATTTCTCTCAATCAGTATTTCGATTGGAAATTGGGAGTTATGTTCAA 1186
Query 1199 GCCAAC-TCGAATATAGGCACGACACTGGTAGCATGATCGAATACCATAGAAACCTCACT 1257
|| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1187 GC-AACCTCGAATATAGGCACGACACCGGTAGCATGATCGAATACCATAGAAACCTCACT 1245
Query 1258 CTTAGTGGCTTTCGAGCTCTCGTTTTCAGCGGAGATCACGATATGTGTGTACCATATACT 1317
||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 1246 CTTAGTGGCTTTCGAGCTCTCATTTTCAGTGGAGATCATGATATGTGTGTACCATATACT 1305
Query 1318 GGTTCTGAAGCATGGACTAAGGCAATGGGATACAAAGTGGTTGATGAGTGGAGACCATGG 1377
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1306 GGCTCTGAAGCATGGACTAAGGCAATGGGATACAAAGTGGTTGATGAATGGAGGCCATGG 1365
Query 1378 ATTTCAAATAACCAAGCCGCCGGGTTTACACAAGGGTATGCCAATAATCTCACATTTCTA 1437
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 ATGTCAAATAACCAAGTCGCCGGGTTTACACAAGGGTATGCCAATAATCTCACATTTCTA 1425
Query 1438 ACCATTAAGGGTGCAGGACATACCGTTCCAGAATACAAACCACGTGAATCTTTGGACTTC 1497
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1426 ACCATCAAGGGTGCAGGACATACCGTTCCAGAATACAAACCGCGTGAATCTTTGGACTTC 1485
Query 1498 TATAGTCGTTTTCTAGCAGGAGAAAAGATATAGATTTCTCAAGTTTCAT 1546
||||||||||| |||||||||||||||||||||| |||||||||| |||
Sbjct 1486 TATAGTCGTTTCCTAGCAGGAGAAAAGATATAGAATTCTCAAGTTCCAT 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76304828400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5