BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480043
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper ... 857 0.0
> AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper
70 | chr5:24472639-24473319 FORWARD LENGTH=621
Length=621
Score = 857 bits (464), Expect = 0.0
Identities = 533/566 (94%), Gaps = 6/566 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTCGTCTAGTGTCCATCGCTCTCATTGTTTCGATATTCTTGATGGAGTCCCACTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTCGTCTAGTGTCCATCGCTCTCATTGTTTCGATATTCTTGATGGAGTCCCACTA 60
Query 61 CAGGACGATCATTTCAGCTCAGCCTTCCTACCAAACACTGACTTCAATGTCCAGTTGAAT 120
|| ||||||||||||| ||| || |||||||||||||||||||| ||||| || ||| |
Sbjct 61 CACGACGATCATTTCAACTCGGCATTCCTACCAAACACTGACTTTAATGTTCATTTGCAG 120
Query 121 TCCA---TATCGACCCGCAGCAACAATCAGTCTCACTTAGACCCAAATGCAGAAAACATT 177
|| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAAACGTATCGACCCGCATCAACAATCAGTCTCACTTAGACCCAAATGCAGAAAACATT 180
Query 178 TTCCATAATGAAGGTCTTGCTCCAGAAGAAAGGAGGGCAAGAAGAATGGTCTCTAACCGG 237
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 181 TTCCATAACGAAGGTCTTGCTCCAGAAGAAAGAAGAGCAAGAAGAATGGTCTCTAACCGG 240
Query 238 GAATCTGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA 300
Query 298 GTTGAACAGCTCATGATGTTGAATCATCACTTG-CATGAGAAAGTCATCAACTTGTTGGA 356
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 301 GTTGAACAACTCATGATGTTGAATCATCACTTGTC-TGAGAAAGTCATCAACTTGTTGGA 359
Query 357 AAGCAACCACCAAATCCTGCACGAGAACTCACAGCTGAAAGAGAAAGCCTCTTCCTTTCA 416
||||||||| || ||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 360 AAGCAACCATCAGATCCTACAAGAGAACTCACAGCTGAAAGAGAAAGTCTCTTCCTTTCA 419
Query 417 CTTGCTCATGGCAGATGTGTTATTACCCATGAGAAATGCAGAGAGCAACATCAATGACCG 476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTGCTCATGGCAGATGTGCTATTACCCATGAGAAATGCAGAGAGCAACATCAATGACCG 479
Query 477 CAATGTCAATTATCTAAGAGGAGAAACATCAAACCGTCCCACCAACAGTCCCTTTGTCTG 536
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 480 CAATGTGAATTATCTAAGAGGAGAACCATCAAACCGTCCCACCAACAGTCCCTTTGCCAG 539
Query 537 TAGTACTATGATTGATGC-ATATATG 561
|||||||||||||||||| || ||||
Sbjct 540 TAGTACTATGATTGATGCCATGTATG 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5