BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480044
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76800.1 | Symbols: | Vacuolar iron transporter (VIT) famil... 977 0.0
> AT1G76800.1 | Symbols: | Vacuolar iron transporter (VIT) family
protein | chr1:28829308-28830277 FORWARD LENGTH=970
Length=970
Score = 977 bits (529), Expect = 0.0
Identities = 676/743 (91%), Gaps = 26/743 (3%)
Strand=Plus/Plus
Query 1 TATATCTCAACAAAACAAAACATCATAAAGAAACAATGGATCAATTAGGTAGTAACACGA 60
|||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 4 TATATCTCAACAAAACAAAACA-AACAAAGAAACAATGGATCAATCAGGTAGTAACACGA 62
Query 61 ACATGGACATAGAGAAGGAGTCAACAACCTTCGATTACTCCAAACGTTCCCAATGGCTAC 120
||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct 63 ACATGGACATAGAGAAGGAATCAACTACATTTGATTACTCCAAACGTTCCCAATGGCTAC 122
Query 121 GCGCCGCCGTGCTTGGAGCCAACGACGGTCTTGTCTCCACCGCATCGTTGATGATGGGAG 180
| || |||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 123 GTGCGGCCGTGCTCGGAGCCAACGATGGTCTAGTCTCCACCGCGTCGTTGATGATGGGAG 182
Query 181 TTGGCGCCGTGAAGCATGACGTCAAGGCAATGATTCTCTCCGGATTCGCAGGGATGGTGG 240
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TTGGAGCTGTGAAGCATGACGTCAAGGCAATGATTCTCTCCGGATTCGCAGGGATGGTGG 242
Query 241 CAGGAGCTTGTAGTATGGCCATCGGAGAGTTCGTCTCTGTTTACTCTCAGTACGATATAG 300
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 243 CAGGAGCTTGTAGTATGGCCATAGGAGAGTTCGTCTCAGTTTACTCTCAGTACGATATAG 302
Query 301 AGGTGGCTCAAATGGAGAGAGACAGTGTGGAGATAGAGAAAGAGAAGCTTCCTAGTCCGA 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGGTGGCTCAGATGGAGAGAGACAGTGTGGAGATAGAGAAAGAGAAGCTTCCTAGTCCGA 362
Query 361 TACAAGCGGCTGCTGCATCCGCTCTTGCGTTTTCGGCAGGTGCGATTGTGCCACTTTTGG 420
| ||||| || ||||| || || ||||||||||| |||||||||||||| || |||||||
Sbjct 363 TGCAAGCCGCGGCTGCGTCTGCCCTTGCGTTTTCCGCAGGTGCGATTGTACCGCTTTTGG 422
Query 421 CGGCTGCTTTTGTGAAAGAGTATAAAG-TTAGGATCATTGCGGTTGTGGTGGCGGTTACG 479
| ||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||
Sbjct 423 CTGCTGCTTTTGTGAAAGAGTAT-AAGATGAGGATCATTTCGGTTGTGGTGGCGGTTACG 481
Query 480 GTGGCTCTTATGGTTTCCGGGTGGTTAGGAGCGGCGCTAGGGAAAGCACCAGCGGTTAGG 539
|| ||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 482 GTAGCTCTTATGGTTTTCGGATGGTTAGGAGCAGCGCTAGGGAAGGCACCAGCGGTTAGG 541
Query 540 TCATCGGCTAGGGTTTCGTTTGGAGGGTGGTTAGCTATGGCGGTTACGTTTGGCTTGACT 599
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 542 TCATCGGCTAGGGTTTTGTTTGGAGGTTGGTTAGCTATGGCGGTTACGTTTGGCTTGACT 601
Query 600 AAGCTTATTGGGTTATATGGATTGTGAAGACATCTTTTTATAA-ATTCTA---TA----- 650
||||||||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 602 AAGCTTATTGGGTTATATGGATTGTGAAGACATCTTTTTATAAGATTGTAAGATAAGTGT 661
Query 651 --C----T---G--G---ATTTCGGTTGGAAATACCTAAAACTTAACAGTATGTTTACGG 696
| | | | ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 662 TGCCGAATTCTGTAGTGGATTTCGGTTGGAAATACATTAAACTTAACAGTATGTTTACGG 721
Query 697 TACGTGAACAAACTCTTTTACTT 719
|||||||| ||||||||||||||
Sbjct 722 TACGTGAATAAACTCTTTTACTT 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5