BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480045
Length=1937
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27190.1 | Symbols: | Leucine-rich repeat protein kinase fa... 1199 0.0
AT1G69990.1 | Symbols: | Leucine-rich repeat protein kinase fa... 377 2e-103
AT3G46385.1 | Symbols: | pseudogene of unknown protein | chr3:... 159 7e-38
> AT1G27190.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:9446657-9448825 REVERSE LENGTH=2169
Length=2169
Score = 1199 bits (649), Expect = 0.0
Identities = 719/753 (95%), Gaps = 3/753 (0%)
Strand=Plus/Plus
Query 1188 AGCATATGCCTAATGGCACGTTGTTTTCTCAGTTGCACAATGGTGGATTGTGTGATGCTG 1247
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 AGCATATGGTTAATGGTACGTTGTTTTCTCAGTTGCACAATGGTGGATTGTGTGATGCTG 1277
Query 1248 --TTGGATTGGCCGACTCGGCTTGCGATTGGTGTGGGAGCTGCTAAAGGGTTAGCTTGGC 1305
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1278 TTTTGGATTGGCCGACTCGGCGTGCGATTGGTGTGGGAGCTGCTAAAGGGTTAGCTTGGT 1337
Query 1306 TGCATCATGGATGCCAACCGCCGTATTTGCATCAGTTCATTAGTTCCAATGTTATACTTC 1365
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1338 TGCATCATGGATGCCAACCGCCGTATTTGCATCAGTTTATTAGCTCCAATGTTATACTTC 1397
Query 1366 TTGATGATGATTTTGATGCTCGGATAACGGATTACGGTTTGACAAGGCTAGTTGGATCTC 1425
|||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||
Sbjct 1398 TTGATGATGATTTTGATGCTCGGATAACAGATTACGGATTGGCAAAGCTAGTTGGATCTC 1457
Query 1426 GCGATTCTAGCGATAGCTCGTTCAATAATGGGGATTTGGGGGAGTTAGGTTATGTGGCGC 1485
| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1458 GTGATTCGAACGATAGCTCGTTCAATAATGGGGATTTGGGGGAGTTAGGTTATGTAGCGC 1517
Query 1486 CTGAGTATTCGAGCACCATGGTTGCATCTTTGAAAGGAGATGTGTATGGGTTTGGAATTG 1545
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1518 CTGAGTATTCGAGCACCATGGTTGCGTCTTTGAAAGGAGATGTGTATGGGTTTGGGATTG 1577
Query 1546 TACTTCTTGAATTTGTTACTGGGCAAAAGCCTTTATCTGTTATTAACGGTGTGGAAGGGT 1605
| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1578 TGCTTCTTGAATTGGTTACAGGGCAAAAGCCTTTGTCTGTTATTAACGGTGTGGAAGGGT 1637
Query 1606 TTAAAGGGAGTTTAGTTGACTGGGTGAGTCAGTATTTGGGGACTGGTAGAAGCAAAGACG 1665
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1638 TTAAAGGGAGTTTAGTTGACTGGGTGAGTCAGTATTTGGGTACTGGTAGAAGCAAAGACG 1697
Query 1666 CTATTGATAGAAGCATATGTGTTAAAGGACACGATGAGGAGATATTGCAATTCTTGAAAA 1725
||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 1698 CTATTGATAGAAGCATATGTGATAAAGGACACGATGAGGAGATATTGCAGTTCCTGAAAA 1757
Query 1726 TCGCATGTAGCTGTGTTGTGTCCAGGCCTAAGGAAAGGCCAACGATGATTCAGGTGTATG 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 TCGCATGTAGCTGTGTTGTGTCCAGGCCTAAGGAAAGGCCAACGATGATTCAGGTGTATG 1817
Query 1786 AATATTTGAAGAACATGGCGGATAAACACGGTGTTTCTGAGCATTACGATGAATTTCCAC 1845
||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1818 AATCTTTGAAGAACATGGCAGATAAACACGGTGTTTCGGAGCATTACGATGAATTTCCTC 1877
Query 1846 TGGTCTTCAACAAACAAGAACCTTGAGTATCTT-ACCAGAAAGTAGTCTTTTTTGGCAGC 1904
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1878 TGGTCTTCAACAAACAAGAAGCTTGAGTATCTTTACCAGAAAGTAGTCTTTTTTGGCAGC 1937
Query 1905 TTAAGCGCTAAAAAGGTATGAGAAATCTACTTT 1937
||||||||||| |||||||||||||||||||||
Sbjct 1938 TTAAGCGCTAAGAAGGTATGAGAAATCTACTTT 1970
Score = 909 bits (492), Expect = 0.0
Identities = 583/626 (93%), Gaps = 10/626 (2%)
Strand=Plus/Plus
Query 567 AATAAGCTTGGTGGTTCGATTCCTACTCAGAT-CGTTGAGTCTTTCTG-CTTCGACGTCT 624
||||||||| ||||||||||||| ||||| | || || | || | |||||||||||
Sbjct 560 AATAAGCTTTCTGGTTCGATTCCTTCTCAGTTGAGTCGATTAGATC-GCCTTCGACGTCT 618
Query 625 TTCTCTTGCTGGGAATGATCTCTCCGGTGCGATTCCTTCCGAGCTGGCGCGGTGGATTCG 684
|||||| || |||||||||||||||||| ||||||| ||||||||||| | || ||||
Sbjct 619 TTCTCTAGCAGGGAATGATCTCTCCGGTACGATTCCGTCCGAGCTGGCTC---GG-TTCG 674
Query 685 GAGGAGACGATTTTAGCGGGAATAACGGACTTTGCGGGAAGCCTTTATCGAGATGTGGTG 744
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 675 GAGGAGACGATTTTAGCGGGAATAACGGACTTTGTGGGAAGCCTTTATCGCGATGTGGAG 734
Query 745 CGTTGAATGGGAGAAATTTGAGTATTATTATTGCTGCTGGAGTTATTGGTGTC-GTTGGA 803
||||||||||||||||| ||||||||||||| | |||||||||| |||| | | ||||||
Sbjct 735 CGTTGAATGGGAGAAATCTGAGTATTATTATAGTTGCTGGAGTTCTTGGAG-CTGTTGGA 793
Query 804 TCTTTGTGTGTTGGTTTAGTGATATTTTGGTGGTTCTTTATTAGAGAAGGTAGTAGGAAG 863
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 794 TCTTTGTGCGTTGGTTTAGTTATATTCTGGTGGTTCTTTATTAGAGAAGGTAGTAGGAAG 853
Query 864 AAGAAAGGTTATGGTGCTGGGAAGTCTAAGGATGATAGTGATTGGATTGGTTTGTTGAGG 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 AAGAAAGGTTATGGTGCTGGGAAGTCTAAGGATGATAGTGATTGGATTGGTTTGTTGAGG 913
Query 924 TCACATAAGCTTGTTCAGGTGACTTTGTTTCAGAAGCCCATTGTGAAGATTAAATTGGGT 983
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 914 TCACATAAGCTTGTTCAGGTGACTTTGTTTCAGAAACCTATTGTGAAGATTAAATTGGGT 973
Query 984 GATTTAATGGCTGCTACGAATAATTTTAGTTCAGGGAATATCGATGTTTCGTCGAGGACT 1043
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 974 GATTTAATGGCTGCTACGAACAATTTTAGTTCAGGGAATATCGATGTTTCGTCGAGGACT 1033
Query 1044 GGGGTTTCGTATAAAGCGGATTTACCTGATGGGTCTGCGCTTGCGGTGAAGAGGCTTAGC 1103
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1034 GGGGTTTCGTATAAAGCGGATTTACCTGATGGGTCTGCACTTGCGGTGAAGAGGCTTAGT 1093
Query 1104 GCTTGTGGGTTTGGTGAGAAACAGTTCAGGTCGGAGATGAATAGGTTAGGAGAGCTTAGA 1163
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1094 GCTTGTGGGTTTGGTGAGAAACAGTTTAGGTCGGAGATGAATAAGTTAGGAGAGCTTAGA 1153
Query 1164 CATCCGAATTTTGGTGCCGCTTTTAG 1189
||||||||||| ||||||||||||||
Sbjct 1154 CATCCGAATTT-GGTGCCGCTTTTAG 1178
Score = 523 bits (283), Expect = 2e-147
Identities = 303/312 (97%), Gaps = 4/312 (1%)
Strand=Plus/Plus
Query 1 AACTAGATCCATCCATT-ATCATGAAGAAGATCTTCATCACACTCTTATGGCTTCTCTTT 59
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 78 AACTAGATCCATCC-TTAATCATGAAGAAGATCTTCATCACACTCTTATGGCTTCTCTTC 136
Query 60 ATAAGCTCGTTTCTCTGTTCTTCTTCTTCAGCTGAAGACGACGTTCTTTGTCTCCAAGGT 119
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 137 ATAAGCTCGTTTCTCTGTTCTTCTTCTTCAGCTGAAGACGACGTTCTCTGTCTCCAAGGT 196
Query 120 TTGAAAAACTCACTCATCGATCCATT-ATCTAGACTCAGTTCCTGGTCTTTCCCAAACTC 178
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 197 TTGAAAAACTCACTCATCGATCC-TTCTTCTAGACTCAGTTCCTGGTCTTTCCCAAACTC 255
Query 179 TTCAGCTTCTTCGATTTGCAAGCTCACTGGTGTTTCGTGCTGGAACGAGAAAGAGAATCG 238
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 256 TTCAGCTTCTTCGATTTGTAAGCTCACTGGTGTTTCCTGCTGGAACGAGAAAGAGAATCG 315
Query 239 GATTATTTCTCTTCAGCTTCAATCGATGCAGCTCGCCGGTGAGATTCCTGAGTCTCTTAA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GATTATTTCTCTTCAGCTTCAATCGATGCAGCTCGCCGGTGAGATTCCTGAGTCTCTTAA 375
Query 299 GCTTTGTCGTAG 310
||||||||||||
Sbjct 376 GCTTTGTCGTAG 387
Score = 159 bits (86), Expect = 7e-38
Identities = 94/98 (96%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 509 GATTCCTTCTCAAATCTGTTCTTGGCTTCCCTATCTCGTTACGTTAGATCTATCTGGGAA 568
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 430 GATTCCTTCTCAAATCTGTTCGTGGCTTCCTTATCTCGTTACGTTAGATCTGTCTGGGAA 489
Query 569 TAAGCTTGGTGGTTCGATTCCTACTCAGATCGTTGAGT 606
||||||||||||||||||||| ||||||||||||||||
Sbjct 490 TAAGCTTGGTGGTTCGATTCCGACTCAGATCGTTGAGT 527
> AT1G69990.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:26360235-26362010 REVERSE LENGTH=1776
Length=1776
Score = 377 bits (204), Expect = 2e-103
Identities = 461/582 (79%), Gaps = 29/582 (5%)
Strand=Plus/Plus
Query 619 ACGTCTTTCTCTTGCTGGGAATGATCTCTCCGGTGCGATTCCTTCCGAGCTGGCGCGGTG 678
||| |||||||| |||| || |||||||| ||| ||||||| |||||||| | |
Sbjct 495 ACGACTTTCTCTAGCTGATAACGATCTCTCTGGTTCGATTCCCTCCGAGCT--ATC--T- 549
Query 679 GATT-CGGAGGAGACGATTTTAGCGGGAATAACGGACTTTGCGGGAAGCCTTTATCGAGA 737
||| ||||| ||| | |||| |||| ||| ||||||||| || ||||| ||||| | |
Sbjct 550 CATTACGGAGAAGATGGTTTTCGCGGTAATGGCGGACTTTGTGGTAAGCCGTTATCCA-A 608
Query 738 -TGTGGTGCGTTGAATGGGAGAAATTTGA-GTATTATTATTGCTGCTGGAGTTATTGGTG 795
|| ||| |||| || || | ||| || | | || ||| | ||||||| |||||||| |
Sbjct 609 CTGCGGTTCGTTTAACGGTAAAAACTTAACG-ATCATTGTAACTGCTGGCGTTATTGGAG 667
Query 796 TC-GTTGGATCTTTGTGTGTTGG-TTTAGTGATATTTTGGTGGTTCTTTATTAGAGA-AG 852
| ||||| || ||||||||||| ||| | ||| ||||||||||||||||||||||| ||
Sbjct 668 -CTGTTGGTTCATTGTGTGTTGGATTT-GGGATGTTTTGGTGGTTCTTTATTAGAGATAG 725
Query 853 GTAGTAGGAAGAAGAA--A-GGTTATGGTGCTGGGAAGTCTAAGGATGATAGTGATTGGA 909
| || | || ||| || | |||||||| || || || | ||||||||||||||||||||
Sbjct 726 G-AGGAAGATGAATAACTACGGTTATGGCGCCGGAAAATGTAAGGATGATAGTGATTGGA 784
Query 910 TTGGTTTGTTGAGGTCACATAAGCTTGTTCAGGTGACTTTGTTTCAGAAGCCCATTGTGA 969
||||||||||||| |||||||||||||| || || ||| |||||||||| || |||||||
Sbjct 785 TTGGTTTGTTGAGATCACATAAGCTTGTGCAAGTTACTCTGTTTCAGAAACCTATTGTGA 844
Query 970 AGATTAAATTGGGTGATTTAATGGCTGCTACGAATAATTTT-AGTTCAGGGAATATCGAT 1028
|||| ||||||| |||||| || | |||||||| |||| | ||| |||||||||| |
Sbjct 845 AGATCAAATTGGTTGATTTGATTGAAGCTACGAACGGTTTTGA-TTCCGGGAATATCGTT 903
Query 1029 GTTTCGTCGAGGACTGGGGTTTCGTATAAAGCGGATTTACCTGATGGGTCTGCGCTTGC- 1087
||||||||||| | ||| || ||||| ||||| ||||| |||||||||||| | |||
Sbjct 904 GTTTCGTCGAGAAGTGGTGTCTCGTACAAAGCTGATTTGCCTGATGGGTCTACA-TTGGA 962
Query 1088 GGTGAAGAGGCTTAGC-GCTTGT-G-G-GTTTGGTGAGAAACAGTTCAGGTCGGAGATGA 1143
||| ||||||||||| | |||| | | | || ||||||||||||| ||||| ||||| |
Sbjct 963 GGTTAAGAGGCTTAGTAG-TTGTTGTGAGCTTAGTGAGAAACAGTTTAGGTCTGAGATTA 1021
Query 1144 ATAGGTTAGGAGAGCTTAGACATCCGAATTTTGGTGCCGCTT 1185
| | |||||| || | || ||||||||||| ||| ||||||
Sbjct 1022 ACAAGTTAGGTCAGATCAGGCATCCGAATTT-GGTTCCGCTT 1062
> AT3G46385.1 | Symbols: | pseudogene of unknown protein | chr3:17065485-17066571
REVERSE LENGTH=1087
Length=1087
Score = 159 bits (86), Expect = 7e-38
Identities = 108/118 (92%), Gaps = 3/118 (3%)
Strand=Plus/Plus
Query 788 TATTGGTGTC-GTTGGATCTTTGTGTGTTGGTTTAGTGATATTTTGGTGGTTCTTTATTA 846
|||||| | | ||||||||||||| |||||||||||| |||||||||| |||||||||||
Sbjct 909 TATTGGAG-CTGTTGGATCTTTGTATGTTGGTTTAGTAATATTTTGGTAGTTCTTTATTA 967
Query 847 GAGAAGGTAGTAGGAAGAAGAAAGGTTATGGTGCTGGGAAGTCTAAGGATGATAGTGA 904
||||||||||||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct 968 GAGAAGGTAGTAGGAAGAAGAAAAGTTATGGTGCTGAAAA-TCTAAGGATGATAGTGA 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95933241495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5