BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480047
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25480.1 | Symbols: | Rhodanese/Cell cycle control phosphat... 1421 0.0
> AT3G25480.1 | Symbols: | Rhodanese/Cell cycle control phosphatase
superfamily protein | chr3:9235196-9236607 REVERSE LENGTH=1122
Length=1122
Score = 1421 bits (769), Expect = 0.0
Identities = 931/1008 (92%), Gaps = 15/1008 (1%)
Strand=Plus/Plus
Query 1 ATTACTAATGACGTCTCTTCCGATAATCCTCGCATCCTCTCCACTGCGAAACCTAACAAA 60
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 3 ATTACCAATGACGTCTCTTCCAATAATCCTCGCATCCTCTCCACTGCGAAACCTAACCAA 62
Query 61 ACCTTGTTCAACTTCTCAAACCCCAAAACCCAATCCAAATTC-ACCAAAACAACCTCCAA 119
|||||||||||||||||||| ||||||||||| || |||||| | |||||||||||||||
Sbjct 63 ACCTTGTTCAACTTCTCAAATCCCAAAACCCATTCAAAATTCTA-CAAAACAACCTCCAA 121
Query 120 TACATCTCCTAACCAAAACCCATCTCTCTGTAACCATTTCCCAACTCATCATCACATCCC 179
|||||||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||
Sbjct 122 TACATCTCCTAACCAAAACCAATCTCTCTGTAACCATTTCCCAACTAATTATCACTTCCC 181
Query 180 CTGTTCTCGCATCTGAATCATTCGACTCAATTTCATCAGACCCATCTCCTGGAAGAATCG 239
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 182 CTGTTCTCGCATCTGAATCATTCGACTCAATTTCATCAGACCCATCTTCTGGAAAAATCG 241
Query 240 ATTTGGAGTCAATTTTAGTCACAATTGATAATTTCTTCAACAAGTATCCATTTTTCGTAG 299
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ATTTAGAGTCAATTTTGGTCACAATTGATAATTTCTTCAACAAGTATCCATTTTTCGTAG 301
Query 300 CGGGATGTACTTTTATCTATCTTGTGGTTTATCCATCTGTGATTTTTTACTTGAGGAAGT 359
||||||||||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 302 CGGGATGTACTTTTACCTATCTTGTTGTTTATCCAGCTGTGATGTTTTACTTGAGGAAGT 361
Query 360 ATAAACCAATATCCGCCATGAATGCGTTTCGTAAGCTTAAGA-TGGAATCTGATTCGCAG 418
|||||||||||||||||||||| ||||||||||||||||||| || |||||||||| |||
Sbjct 362 ATAAACCAATATCCGCCATGAACGCGTTTCGTAAGCTTAAGAATG-AATCTGATTCTCAG 420
Query 419 CTTTTGGATATTAGAGATGAT-AAGACTTTGGCTACATTGGCATCACCGAATCTTAAGTT 477
||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||
Sbjct 421 CTTTTGGATATTAGAGATG-TCAAGACTTTGGCTTTGTTAGCATCACCGAATCTTAAGTT 479
Query 478 TTTGGGTAAGAGTTCTGTTCAAGTTCCGTTTAGTGAGAATGATGAAGATGGGTTCTTGAA 537
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 480 TTTGGGTAAGAGTTCTGTTCAGGTTCCGTTTAGTGAGAATGATGAAGAAGGGTTTTTGAC 539
Query 538 GAAAGTTAAAGGAAGCTTCTTTGACCCTGAAAATACAGTTGTTTGTGTTCTTGATAATTT 597
|||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 540 GAAAGTTAAAGGAAGCTTCTCTGATGCTGAGAATACAGTTGTTTGTGTTCTTGATAATTT 599
Query 598 TGATGGTAATTCGTCGAAAGTGGCGGAATTGTTGATCAAGAATGGTTTCAAAGAAGCTTA 657
||||||||| ||||||||||| || |||||| |||||||||||||||||||||| |||||
Sbjct 600 TGATGGTAACTCGTCGAAAGTAGCTGAATTGCTGATCAAGAATGGTTTCAAAGAGGCTTA 659
Query 658 TTATATTAGAGGTGGCGCGAGAGGGAAGAATGGTTGGTTGGCGATTCAAGAAGAGCTTTT 717
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 TTATATTAGAGGCGGCGCGAGAGGGAAGAATGGTTGGTTGGCTATTCAAGAAGAGCTTTT 719
Query 718 GCCTCCACCGGTGCATATGTATACTGCGAAAAACGTAAAATCTTCAACCAACAATGAGGC 777
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 720 GCCTCCACCGGTGCATATGTACACTGCGAAAAACGTAAAATCTTCAAACAACAATGAAGC 779
Query 778 GTCAATTGTTGGAACTGAGAACTAGTTCGAGAACAGAGCGTAATGTGGCAAGACATGATA 837
||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||
Sbjct 780 GTCTGTTGTTGGAACTGAGAACTAGTTCAAGAACATAGCGTAATGTGGCAGGACATGGTA 839
Query 838 CTACCA-GACCATTGGAATATGAGAAAGCTTATTTAGGTGGAAGACTAGTTATATATTGA 896
|||||| | | | ||||| |||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 840 CTACCATGTC-ACTGGAACATGAGAAAGCTTCTTTAGGTGGAAGAGTAGCTATATATTGA 898
Query 897 AAGACTTGTTTAGATCTCAAGGCCACT--ATGCTTACCAGAA--GCTAACCTTGTCTAC- 951
|||||||||||||| |||||| | ||| ||||||| || || |||||||||||||||
Sbjct 899 AAGACTTGTTTAGACCTCAAGACAACTCTATGCTTAGCAAAAAAGCTAACCTTGTCTACT 958
Query 952 A--TACTGATTTCTCAGGCAATTCCAATAAAATGAGACTTGTTATTAT 997
| || ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 959 ACATATTGATTTCTCAGACCATTCCAATAAAATGAGACTTGTTATTAT 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48827590884
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5