BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480054
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25520.1 | Symbols: ATL5, PGY3, OLI5, RPL5A | ribosomal prot... 1784 0.0
AT5G39740.1 | Symbols: OLI7, RPL5B | ribosomal protein L5 B | c... 1358 0.0
AT5G40130.1 | Symbols: | 60S ribosomal protein L5 (RPL5C), pse... 250 2e-65
> AT3G25520.1 | Symbols: ATL5, PGY3, OLI5, RPL5A | ribosomal protein
L5 | chr3:9269293-9271390 REVERSE LENGTH=1249
Length=1249
Score = 1784 bits (966), Expect = 0.0
Identities = 1078/1131 (95%), Gaps = 11/1131 (1%)
Strand=Plus/Plus
Query 1 CTTCTCGTCACTCTCAATCTCACAGGCAAAGCCTCTCGTTGCTAGAGGAATCAAACAATG 60
|||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 8 CTTCTCTTCACTCACAATCTCACA-GCAAAGCCTCTCGTTGCTAGAGGAATCAAACAATG 66
Query 61 GTGTTTGTGAAGTCCTCCAAGTCGAATGCTTACTTCAAGAGGTACCAAGTTAAGTTCAGG 120
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 67 GTGTTTGTGAAGTCCACCAAGTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGG 126
Query 121 AGAAGAAGAGATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAG 180
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 127 AGAAGAAGAGATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAACCAAGACAAG 186
Query 181 AACAAGTACAATACACCTAAGTACCGTTTTGTTGTCCGGTTTACCAACAAAGACATAGTG 240
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 187 AACAAGTACAATACTCCTAAGTATCGTTTTGTTGTCCGGTTTACCAACAAAGACATAGTG 246
Query 241 GCACAGATTGTCTCTGCAAGCATTGCTGGTGACATTGTTAAAGCTTCTGCTTACGCACAT 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GCACAGATTGTATCTGCAAGCATTGCTGGTGACATTGTTAAAGCTTCTGCTTACGCACAT 306
Query 301 GAGTTGCCTCAGTATGGACTCACTGTTGGTCTTACAAACTATGCTGCAGCTTACTGTACT 360
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GAACTGCCTCAGTATGGTCTCACTGTTGGTCTTACAAACTATGCTGCAGCTTACTGTACT 366
Query 361 GGCCTTCTTTTGGCTCGCCGTGTTCTGAAGATGTTGGAAATGGATGACGAGTATGAGGGC 420
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 367 GGCCTTCTTTTGGCTCGCCGTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGA 426
Query 421 AACGTAGAGGCCACTGGAGAGGACTTTTCCATTGAGCCAACTGAGTCGAGGAGACCTTTC 480
||||| |||||||||||||| ||||||||| ||||||||||||| || ||||||||||||
Sbjct 427 AACGTTGAGGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC 486
Query 481 CGTGCTCTTCTTGATGTCGGACTTATCAGGACCACAACAGGAAACCGTGTGTTTGGTGCC 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 487 CGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTG-- 544
Query 541 CTCAAGGTACTTAAGGGTGCTTTGGATGGAGGTCTTGATATCCCTCACAGTGACAAGAGA 600
| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 545 --C----T-CTTAAGGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGA 597
Query 601 TTTGCTGGTTTCAACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACTACATC 660
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACTACATC 657
Query 661 TATGGTGGCCATGTCTCAAACTACATGAAGCTGTTGGGAGAAGATGAGCCAGAGAAGTTA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TATGGTGGCCATGTCTCAAACTACATGAAGCTGTTGGGAGAAGATGAGCCAGAGAAGTTA 717
Query 721 CAAACTCACTTCAGTGCTTACATCAAGAAAGGAGTTGAAGCTGAGAGCATCGAAGAGTTG 780
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 718 CAAACTCACTTCAGTGCTTACATCAAGAAAGGAGTTGAAGCTGAGAGCATTGAGGAGTTG 777
Query 781 TACAAGAAGGTTCACGCAGCTATTCGCGCAGACCCCAACCCAAAGAAAACCGAGAAACCT 840
|||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 778 TACAAGAAGGTTCACGCAGCTATTCGTGCTGACCCCAACCCAAAGAAAACCGTGAAACCT 837
Query 841 GCCCCCAAGCAACACAAGAGGTACAACTTGAAGAAACTGACGTACGAGGAGAGGAAGAAC 900
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 838 GCTCCCAAGCAACACAAGAGGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAAC 897
Query 901 AAGTTGATCGAGAGAGTCAAGGCATTGAATGGAGCAGGTGGtgatgatgatgatgaggat 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGTTGATCGAGAGAGTCAAGGCATTGAATGGAGCAGGTGGTGATGATGATGATGAGGAC 957
Query 961 gatgaAGAGTAAATCAGTCAAGCCTTCTTTATCTTATGTCTCTTGTAGCTTTTTATCTTT 1020
|||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||
Sbjct 958 GATGAAGAGTAAATCAGTCAAGCCTTCTTTATCTCATGCCTCTTGTAGTTTTTTATCTTT 1017
Query 1021 TGAGCTTAATGCCTCAAATTTTCTGTTTTCAGACTAAAACACTTTGCTTTTGTGTTCACA 1080
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 TGAGCTTAATGCCTCAAATTTTCTGTTTTCAGACTAAAACACTCAGCTTTTGTGTTCACA 1077
Query 1081 TTTTTAATTGTGTTCGAAGATTTTGATTTTGAGGATACATTTTCTTTTAAG 1131
|||| |||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct 1078 TTTT-AATTGTGTTCGAGGATTTTGATATTGAGGATACATTTTCTTTGAAG 1127
> AT5G39740.1 | Symbols: OLI7, RPL5B | ribosomal protein L5 B |
chr5:15903296-15905464 FORWARD LENGTH=1254
Length=1254
Score = 1358 bits (735), Expect = 0.0
Identities = 896/972 (92%), Gaps = 17/972 (2%)
Strand=Plus/Plus
Query 53 AAACAATGGTGTTTGTGAAGTCCTCCAAGTCGAATGCTTACTTCAAGAGGTACCAAGTTA 112
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 65 AAACAATGGTGTTTGTGAAGTCCTCCAAATCGAATGCTTACTTCAAGAGGTACCAAGTGA 124
Query 113 AGTTCAGGAGAAGAAGAGATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAACC 172
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 125 AGTTCAGGAGAAGGAGAGATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATC 184
Query 173 AAGACAAGAACAAGTACAATACACCTAAGTACCGTTTTGTTGTCCGGTTTACCAACAAAG 232
||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||
Sbjct 185 AAGACAAGAACAAGTACAACACCCCTAAGTACCGTTTTGTTGTTCGATTTACCAACAAAG 244
Query 233 ACATAGTGGCACAGATTGTCTCTGCAAGCATTGCTGGTGACATTGTTAAAGCTTCTGCTT 292
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 245 ACATTGTGGCACAGATTGTATCTGCAAGCATAGCTGGTGACATTGTTAAAGCTTCGGCTT 304
Query 293 ACGCACATGAG-TTGCCTCAGTATGGACTCACTGTTGGTCTTACAAACTATGCTGCAGCT 351
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 305 ACGCACATGAGCTT-CCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGCT 363
Query 352 TACTGTACTGGCCTTCTTTTGGCTCGCCGTGTTCTGAAGATGTTGGAAATGGATGACGAG 411
|||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||
Sbjct 364 TACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAATGGATGATGAG 423
Query 412 TATGAGGGCAACGTAGAGGCCACTGGAGAGGACTTTTCCATTGAGCCAACTGAGTCGAGG 471
|| ||||| ||||||||||||||||||||||||||||| | || |||||||| || ||
Sbjct 424 TACGAGGGAAACGTAGAGGCCACTGGAGAGGACTTTTCTGTGGAACCAACTGATTCCAGA 483
Query 472 AGACCTTTCCGTGCTCTTCTTGATGTCGGACTTATCAGGACCACAACAGGAAACCGTGTG 531
|||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 484 AGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACTACCACTGGAAACCGTGTG 543
Query 532 TTTGGTGCCCTCAAGGTACTTAAGGGTGCTTTGGATGGAGGTCTTGATATCCCTCACAGT 591
|||||||| ||||||| | | ||||||| ||||||||||||||||||||||||
Sbjct 544 TTTGGTGCACTCAAGGGA-----G----CTTTGGACGGAGGTCTTGATATCCCTCACAGT 594
Query 592 GACAAGAGATTTGCTGGTTTCAACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGG 651
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 595 GACAAGAGATTTGCTGGTTTCCACAAAGAGAACAAGCAACTTGATGCTGAAATCCACAGG 654
Query 652 AACTACATCTATGGTGGCCATGTCTCAAACTACATGAAGCTGTTGGGAGAAGATGAGCCA 711
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 655 AACTACATCTACGGTGGCCACGTCTCAAACTACATGAAGCTGTTGGGGGAAGATGAGCCG 714
Query 712 GAGAAGTTACAAACTCACTTCAGTGCTTACATCAAGAAAGGAGTTGAAGCTGAGAGCATC 771
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 715 GAGAAGTTGCAAACTCACTTCAGTGCTTACATTAAGAAAGGAGTTGAAGCTGAGAGCATC 774
Query 772 GAAGAGTTGTACAAGAAGGTTCACGCAGCTATTCGCGCAGACCCCAACCCA-AAGAAAAC 830
|| ||| ||||||||||||||||||||||||| || ||||| ||||||| | ||||||||
Sbjct 775 GAGGAGATGTACAAGAAGGTTCACGCAGCTATCCGAGCAGAACCCAACC-ATAAGAAAAC 833
Query 831 CGAGAAACCTGCCCCCAAGCAACACAAGAGGTACAACTTGAAGAAACTGACGTACGAGGA 890
||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 834 CGAGAAATCTGCTCCCAAGGAACACAAGAGGTACAACTTGAAGAAACTGACTTACGAAGA 893
Query 891 GAGGAAGAACAAGTTGATCGAGAGAGTCAAGGCATTGAATGGAGCAGGTGGtgatgatga 950
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 894 GAGGAAGAACAAGTTGATCGAGAGAGTGAAGGCATTAAACGGAGCAGGTGGTGATGATGA 953
Query 951 tgatgaggatgatgaAGAGTAAATCAG---TCAAGCCTTCTTTATCTTATGTCTCTTGTA 1007
|||||||||||||||||||||||||| ||||||||||||| ||| ||| |||| |||
Sbjct 954 TGATGAGGATGATGAAGAGTAAATCACCAATCAAGCCTTCTTTGTCTCATGCCTCTAGTA 1013
Query 1008 GCTTTTTATCTT 1019
|||||||| |||
Sbjct 1014 GCTTTTTA-CTT 1024
> AT5G40130.1 | Symbols: | 60S ribosomal protein L5 (RPL5C), pseudogene,
60S RIBOSOMAL PROTEIN L5, Arabidopsis thaliana, SWISSPROT:RL5_ARATH;
blastp match of 70% identity and 7.9e-26
P-value to GP|13359453|dbj|BAB33422.1||AB049724 putative senescence-associated
protein {Pisum sativum} | chr5:16053697-16054056
REVERSE LENGTH=360
Length=360
Score = 250 bits (135), Expect = 2e-65
Identities = 168/184 (91%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 685 ATGAAGCTGTTGGGAGAAGATGAGCCAGAGAAGTTACAAACTCACTTCAGTGCTTACATC 744
|||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAAGCTGTTGGGGGAATATGAGCCAGAGAAGTTACAAACTCTCTTCAGTGCTTACATT 60
Query 745 AAGAAAGGAGTTGAAGCTGAGAGCATCGAAGAGTTGTACAAGAAGGTTCACGCAGCTATT 804
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 61 AAGAAAGGAGTTGAAGCTGAGAGCATCGAGGAGATGTACAAGAAGGTTCACGCAGCTATC 120
Query 805 CGCGCAGACCCCAACCCA-AAGAAAACCGAGAAACCTGCCCCCAAGCAACACAAGAGGTA 863
|| ||||| ||||||| | ||||||||||||||||| || ||||| |||||||||||||
Sbjct 121 CGAGCAGAACCCAACC-ATAAGAAAACCGAGAAACCAGCTACCAAGGAACACAAGAGGTA 179
Query 864 CAAC 867
|||
Sbjct 180 AAAC 183
Score = 130 bits (70), Expect = 3e-29
Identities = 91/101 (90%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 851 AACACAAGAGGTACAACTTGAAGAAACTGACGTACGAGGAGAGGAAGAACAAGTTGATCG 910
|||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 260 AACAAAACAGGTACGACTTGAAGAAACTGACGTACGAAGAGAGGAAGAACAAGTTGATCG 319
Query 911 AGAGAGTCAAGGCATTGAATGGAGCAGGTGGtga-tgatga 950
||||||| ||||||||||| |||||| |||||| || |||
Sbjct 320 AGAGAGTTAAGGCATTGAACGGAGCATCTGGTGACTGGTGA 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5