BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480056
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25530.1 | Symbols: GHBDH, ATGHBDH, GLYR1, GR1 | glyoxylate ... 1635 0.0
> AT3G25530.1 | Symbols: GHBDH, ATGHBDH, GLYR1, GR1 | glyoxylate
reductase 1 | chr3:9271800-9273615 REVERSE LENGTH=1120
Length=1120
Score = 1635 bits (885), Expect = 0.0
Identities = 1039/1109 (94%), Gaps = 28/1109 (3%)
Strand=Plus/Plus
Query 1 ATGATAATGGTTCTCTGATTAGAAAAAGGCTCCGGCTTTATCATTCTCAGACCATCATCA 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATAATGGTTCTCTGATTAG-AAAAGGCTCCGGCTTTATCATTCTCAGACCATCATCA 59
Query 61 CTAAGCACT-A-T-A--A-TCGGA--G-AGATAGAGAGAAAAAATGGAGGTAGGGTTTCT 111
||||||| | | | | | | | | ||| ||| ||| |||||||| |||||||||||
Sbjct 60 CTAAGCAGTAAGTAAGCACTATAATCGCAGA-AGATAGATAAAATGGAAGTAGGGTTTCT 118
Query 112 GGGTTTGGGTATAATGGGAAAAGCCATGTCAATGAATCTATTGAA-ACATGGATTCAAAG 170
||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 119 GGGTTTGGGAATCATGGGAAAAGCCATGTCAATGAATCTATTGAAGA-ATGGATTCAAAG 177
Query 171 TCACTGTATGGAACAGAACACTCTCCAAGTGTGATGAACTTGTGGAGCATGGTGCATCAG 230
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 178 TCACTGTATGGAACAGAACACTCTCCAAGTGTGATGAGCTTGTGGAGCATGGTGCATCAG 237
Query 231 TATGTGAGAGTCCAGCTGAAGTAATCAAGAAATGCAAATACACTATTGCTATGCTCTCTG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TATGTGAGAGTCCAGCTGAAGTAATCAAGAAATGCAAATACACTATTGCTATGCTCTCTG 297
Query 291 ATCCTTGTGCTGCTCTTTCGGTTGTTTTCGATAAAGGTGGTGTTTTGGAGCAGATTTGTG 350
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 298 ATCCTTGTGCTGCTCTTTCGGTTGTTTTCGATAAAGGCGGTGTTTTGGAGCAGATATGTG 357
Query 351 AAGGAAAAGGTTATATCGATATGTCGACTGTTGATGCAGAGACTTCTTTAAAGATCAATG 410
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 358 AAGGAAAAGGTTATATCGATATGTCGACTGTTGATGCAGAGACTTCTTTGAAGATCAATG 417
Query 411 AGGCAATCACGGGGAAGGGTGGTCGGTTCGTTGAAGGTCCGGTTTCAGGTAGCAAAAAGC 470
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 418 AGGCAATCACCGGGAAGGGTGGTCGGTTCGTAGAAGGTCCGGTTTCAGGTAGCAAAAAGC 477
Query 471 CAGCTGAAGATGGCCAACTCATTATCCTTGCTGCTGGTGACAAGGCGCTCTTTGAGGAAT 530
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 478 CAGCTGAAGATGGCCAACTCATTATCCTTGCTGCTGGTGACAAGGCACTCTTTGAGGAAT 537
Query 531 CAATCCCAGCTTTTGACGTCTTGGGTAAGAGATCGTTTTTCTTGGGACAAGTTGGAAACG 590
|||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 538 CAATCCCAGCTTTTGATGTCTTGGGGAAGAGATCGTTTTACTTGGGACAAGTTGGAAACG 597
Query 591 GAGCTAAAATGAAGCTAATAGTGAACATGATAATGGGAAGCATGATGAACGCATTCTCCG 650
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 598 GAGCTAAAATGAAGCTAATAGTGAACATGATAATGGGAAGCATGATGAATGCATTCTCTG 657
Query 651 AGGGGCTTGTATTGGCTGACAAGAGTGGACTTAGCTCTGACGCTCTTCTGGATATTCTGG 710
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 658 AGGGGCTTGTATTGGCTGACAAGAGTGGACTTAGCTCTGACACTCTTTTGGATATTCTGG 717
Query 711 ATCTTGGCGCAATGACAAACCCGATGTTCAAGGGCAAAGGACCTTCCATGAATAAGAGCA 770
|||| || |||||||| ||||||||||||||||| ||||||||||| ||||| ||||| |
Sbjct 718 ATCTGGGAGCAATGACTAACCCGATGTTCAAGGGGAAAGGACCTTCAATGAACAAGAGTA 777
Query 771 GTTACCCACCAGCATTTCCACTGAAACATCAGCAGAAAGACATGAGGCTAGCTCTTGCTC 830
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTTACCCACCAGCATTTCCATTGAAACATCAGCAGAAAGACATGAGGCTAGCTCTTGCTC 837
Query 831 TTGGCGATGAAAATGCTGTTTCCATGCCTGTAGCCGCGGCTGCGAATGAGGCTTTTAAGA 890
||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||
Sbjct 838 TTGGCGATGAAAACGCGGTTTCCATGCCTGTAGCCGCGGCTGCAAACGAGGCTTTTAAGA 897
Query 891 AGGCGAGAAGCTTGGGACTGGGAGATCTCGACTTCTCTGCGGTGATTGAAGCTGTGAAAT 950
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 898 AGGCGAGAAGCTTGGGACTAGGAGATCTCGACTTCTCTGCTGTGATTGAAGCTGTGAAAT 957
Query 951 TCTCCCGCGAATAGCAAACTG-TTGAAAACATCCACTCATTTGGATTGGCTTGAGTTACT 1009
||||||||||||||||||||| || ||||||||||||||||||||||||| |||| ||||
Sbjct 958 TCTCCCGCGAATAGCAAACTGTTTCAAAACATCCACTCATTTGGATTGGC-TGAGATACT 1016
Query 1010 TAAATGATTGTTATCTTCCCAGATAGAGA-TTACTCATTTGG-----C-CA-A----A-T 1056
|||| ||||||||||||||| ||||||| |||||||||||| | || | | |
Sbjct 1017 GAAATCATTGTTATCTTCCCAAATAGAGATTTACTCATTTGGCCAAACACACATTTTACT 1076
Query 1057 CCTTCACCAAATAAAAAGTCTTAACCACA 1085
|||||||||||||||||||||||||||||
Sbjct 1077 CCTTCACCAAATAAAAAGTCTTAACCACA 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53162377155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5