BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480058
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04039.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1018 0.0
> AT2G04039.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996
(InterPro:IPR021374); Has 38 Blast hits to 38 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr2:1333262-1334566 FORWARD LENGTH=932
Length=932
Score = 1018 bits (551), Expect = 0.0
Identities = 672/728 (92%), Gaps = 18/728 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAAAACTGAGAA-TTTGAGAATAACGAATCTTGTTATCGTTGAAGAAACTCAAT 59
|||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||
Sbjct 119 ATGGAGAAAAACTGAGAATTTTGAGAACAACGAATCTTGTAATCGTTGAAGAAGCTCAAT 178
Query 60 TACAGTTTCTATTTCTTCCTGAA-TATGGCAGCAATAGCAGGAGGATCATTTGGAGTCCC 118
|||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 179 TACAGTTTCTGTTTCTTCCT-AATTATGGCAACAATAGCAGGAGGATCATTTGGAGTCCC 237
Query 119 AAGCTCTCGTATCTCTATAGCCACTCCAACTCTCTCTTCCTCTTCTTTGCTTCCACCACT 178
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 238 AAGCTCTCGTATCTCTATAACAACACCAACTCTCTCTTCCTCTTCTTTGCTTCCACCACT 297
Query 179 AACATTGCAATCAGGTACTAGAAAGGACAACCAATTGCGGTGTGCCGTGCAAGAGTCTTC 238
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 298 AACATTGCAATCAGGTACTAGAAAGGACAACCTTTTGCGGTGTGCCTTGCAAGAGTCTTC 357
Query 239 CACTTCTGCTGTCACTACTGAGAAGAAAGATAAAGAAG-ACAAAAATGAGTCAACAGTGG 297
||||||||||| ||||||| |||||| | ||||||| | | || |||||||||||||
Sbjct 358 AACTTCTGCTGTTGCTACTGAAAAGAAAAACAAAGAAGAAGGAGAA-GAGTCAACAGTGG 416
Query 298 CGGTTCCGGCAAAGAAACCTAAACCCGCAGCT------GC-G--GTGGCGAAACCGCTGA 348
|||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 417 CGGTTCCGGCAAAGAAACCTAAACCCGCAGCTAAAGCGGCTGCAGTGGCGAAACCGCTGA 476
Query 349 GACAAATGATGGAAGAAGATGTGATTCCTCCTTTAAAAGCCATTCTTGAATCTCAAGATG 408
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 477 GACAAATGATGGAAGAAGACGTGATTCCTCCTTTACAAGCCATTCTTGAATCTCAAGATG 536
Query 409 ATATCTCTGAGATCGATTTATCTTACCAAGACGATAAGTTGGAAGGTTTTTTCTTGAAGA 468
|||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 537 ATATCTCTGACATAGATTTATCTTTCCAAGACGATAAGTTGGAAGGTTTTTTCTTAAAGA 596
Query 469 AAAGTATTCCATATTCCTTTTGGG-CTTTCTTCCCTACTGGAAACCTTACA-G-GAGCAA 525
|||||||||||||||||||||||| |||| ||||||||||||||||||||| | || |||
Sbjct 597 AAAGTATTCCATATTCCTTTTGGGCCTTT-TTCCCTACTGGAAACCTTACAGGTGAACAA 655
Query 526 AAGGATTTTCAATTTCCTCACACGGGTCAGGTCCGAGCACCGTGGAGCCGTTTCTCGTTG 585
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct 656 AAGGATTTTCAATTTCCTCACACGGGTCAGGTCCGAGCACCGTGGAACCATTTCTTGTCG 715
Query 586 ACGAGAGGAAACCAACCGCAAACCACGTTGTGTTTTGGGTCGAGAAGCGCCTCGCTGCAC 645
|||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 716 ACGAGAGGAAACCAACTGCGAACCACGTTGTGTTTTGGGTCGAGAAGCGTCTTGCTGCAC 775
Query 646 AAGGGATCATTCCTGTTTGGAACCAATGAGGTTTTTATTCACTTGTAATTATTACATTTG 705
|||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 776 AAGGGATCATCCCCGTTTGGAACCAATGAGGTTTTTGTTCACTTGTAATTATTACATTTG 835
Query 706 TATACCAA 713
||||||||
Sbjct 836 TATACCAA 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34561093136
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5