BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480071
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04220.1 | Symbols: | Plant protein of unknown function (DU... 1426 0.0
AT4G12690.1 | Symbols: | Plant protein of unknown function (DU... 604 3e-172
> AT2G04220.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr2:1445401-1446507 FORWARD LENGTH=1107
Length=1107
Score = 1426 bits (772), Expect = 0.0
Identities = 878/927 (95%), Gaps = 15/927 (2%)
Strand=Plus/Plus
Query 1 ATGTCATTTAGATCACATTCGACAGGGAGTAGTCAATTCGCAGAGAAGATAACAGAGGAT 60
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCATTTAGATCACATTCGAGAGGGAGTAGTCAATTCGCAGAGAAGGTAACAGAGGAT 60
Query 61 CCTGTAACGTATAAGACGGCACAAAGTACCGTGACGTGCATTTACCAAGCGCATATATCC 120
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CCTGTAACGTACAAGACAGCACAAAGCACCGTGACGTGCATTTACCAAGCGCATATATCC 120
Query 121 GGATTTTGGAGGAATGTTACGGTATTGTGGTCCAAGAATGTAATGAATCATTCGCTTATG 180
||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 121 GGATTCTGGAGGAATGTTACGGTATTGTGGTCAAAGAATCTCATGAATCATTCGCTTATG 180
Query 181 GTCATGGTGACTAACGTGGAAGGCGATATGAATTATTGTTGTAAGGTTGATCTTAAGCCT 240
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 181 GTCATGGTGACAAACGTGGAAGGCGATATGAATTATTGTTGCAAGGTTGATCTGAAGCCT 240
Query 241 TGGCATTTTTGGAACAAGAAAGGCTATAAGTCGTTTGAGGTGGAAGGTAACCCGGTAGAG 300
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 241 TGGCATTTTTGGAACAAGAAAGGCTACAAGTCGTTCGATGTGGAAGGTAACCCGGTAGAG 300
Query 301 GTGTATTGGGATTTTAGGTCTGCGAAATTCACGAGTAGTCCAGAGCCGAGCTCAGATTTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GTGTATTGGGATTTTAGGTCTGCGAAATTCACGAGTAGTCCAGAGCCGAGCTCGGATTTC 360
Query 361 TACGTTGCTTTAGTCTCGGAGGAAGAGGTGGTTTTG-TTGGTGGGTGATTACAAGAAGAA 419
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 361 TACGTGGCTTTAGTCTCGGAGGAAGAGGTGGTTTTGCTT-GTGGGTGATTACAAGAAGAA 419
Query 420 AGCTTTCAAAAGAACAAAGTCGAGGCCCGCTTTGGTAGAGGCTGCCTTGTTCTACAAGAA 479
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 420 AGCTTTCAAGAGAACAAAGTCGAGGCCTGCTTTGGTCGAGGCTGCCTTGTTCTACAAGAA 479
Query 480 AGAAAACGTGTTTGGCAAGAAGTGTTTTACGACGC-GGGCTAAGTTTTACGACAGGAAAA 538
||||||||||||||||||||||||||| || || | |||||||||||||||| |||||||
Sbjct 480 AGAAAACGTGTTTGGCAAGAAGTGTTTCACCAC-CAGGGCTAAGTTTTACGATAGGAAAA 538
Query 539 AAGAACACGAGATCATCGTGGAAAGCTCGACCT-CGGGCCCTAAAGAGCCAGAGATGTGG 597
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 539 AAGAACACGAGATCATCGTGGAAAGCTCGACCTCCGGG-CCTAAAGAGCCAGAGATGTGG 597
Query 598 ATAAGCATAGACGGGATTGTGTTAATACAAGTCAAGAATTTGCAATGGAAATTCAGAGGG 657
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 ATTAGCATAGATGGGATTGTGTTGATACAAGTCAAGAATTTGCAATGGAAATTCAGAGGG 657
Query 658 AATCAGACAGTGCTGGTAGATAAACAACCTGTTCAAGTGTTTTGGGATGTGTATGATTGG 717
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 AATCAGACAGTGTTGGTAGATAAACAACCTGTTCAAGTGTTTTGGGACGTGTATGATTGG 717
Query 718 TTGTTTAGCACGCCGGGGACAGGCCATGGTTTGTTCATATTCAAACCAGGGACCACCGAA 777
||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGTTCAGCATGCCTGGGACAGGCCATGGTTTGTTCATATTCAAACCAGGGACCACCGAA 777
Query 778 GACAGCGACATGGAAGGAAGTGGTCACGGTGGTGGTGG-G------AG--CGATACAAGT 828
|||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 778 GACAGCGACATGGAAGGAAGTGGTCACGGTGGTGGTGGTGGTGGTGAGAGCGATACAAGT 837
Query 829 ACAGGGAGCAGGTATTATTCGACCAAGAGTAGTAACCCTTGGCCGCCGGAGTTTTGCCTT 888
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 838 ACAGGGAGCAGGTATTATTCGACCAAGAGTAGTAACCCTTGGCCGCCAGAGTTTTGCCTT 897
Query 889 TTTCTTCATGCATGGAAACTTGAGTAG 915
||||||||||||| ||||||||||||
Sbjct 898 TTTCTTCATGCATACAAACTTGAGTAG 924
> AT4G12690.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr4:7480641-7482150 FORWARD LENGTH=1409
Length=1409
Score = 604 bits (327), Expect = 3e-172
Identities = 601/733 (82%), Gaps = 19/733 (3%)
Strand=Plus/Plus
Query 40 GCAGAGAAGATAACAGAGGATCCTGTAACGTATAAGACGGCACAAAGTACCGTGACGTGC 99
||||||||||||||||||||||| || ||||||||||| |||||||| | ||||||||||
Sbjct 182 GCAGAGAAGATAACAGAGGATCCGGTGACGTATAAGACAGCACAAAGCAGCGTGACGTGC 241
Query 100 ATTTACCAAGCGCATAT-ATCCGGATTTTGGAGGAATGTTACGGTAT-TGTGGTCCAAGA 157
|| |||||||| ||||| | ||||| ||||| || |||| ||| | | ||||| || |
Sbjct 242 ATCTACCAAGCACATATGGT-TGGATTCTGGAGAAACGTTAGGGT-TCTATGGTCTAAAA 299
Query 158 ATGTAATGAATCATTCGCTT-ATGGTCATGGTGACTAACGTGGAAGGCGATATGAATTAT 216
|| | ||||| ||||| ||| | || ||||| |||| ||| ||||||||||||||||
Sbjct 300 ATCTCATGAACCATTC-CTTAACCGTGATGGTCACTAGCGTACAAGGCGATATGAATTAC 358
Query 217 TGTTGTAAGGTTGATCTTAAGCCTTGGCATTTTTGGAACAAGAAAGGCTATAAGTCGTTT 276
||||| ||||||||||||||||| ||||| |||||| |||||||||| || || ||||||
Sbjct 359 TGTTGCAAGGTTGATCTTAAGCCATGGCACTTTTGGTACAAGAAAGGTTACAAATCGTTT 418
Query 277 GAGGTGGAAGGTAACCCGGTAGAGGTGTATTGGGATTTTAGGTCTGCGAAATTC-ACGAG 335
||||| ||||| |||| ||||| || ||||||||||||||||||||||||||| ||| |
Sbjct 419 GAGGTCGAAGGAAACCAAGTAGATGTCTATTGGGATTTTAGGTCTGCGAAATTCAACG-G 477
Query 336 TAGTCCAGAGCCGAGCTCAGATTTCTACGTTGC-TTTAGTCTCGGAGGAAGAGGTGGTTT 394
| || ||||||||||| ||||| ||||| || || || || ||||||||||| ||||
Sbjct 478 CGGGCCTGAGCCGAGCTCCGATTTTTACGTGGCGCTT-GTATCCGAGGAAGAGGTTGTTT 536
Query 395 TGTTGGTGGGTGATTACAAGAAGAAAGCTTTCAAAAGAAC-AAAGTCGAGGCCCGCTTTG 453
||||| |||||||| |||||||||||||||| || || || ||| || || || | |||
Sbjct 537 TGTTGTTGGGTGATCACAAGAAGAAAGCTTTTAAGAGGACTAAA-TCTAGACCTTCCTTG 595
Query 454 GTAGAGGCTGCCTTGTTCTACAAGAAAGAAAACGTGTTTGGCAAGAAG-TGTTTTACGAC 512
|| || ||||||||||||||||||||||| || |||||||| |||||| | |||| ||||
Sbjct 596 GTTGACGCTGCCTTGTTCTACAAGAAAGAGAATGTGTTTGGGAAGAAGAT-TTTTTCGAC 654
Query 513 GCGGGCTAAGTTTTACGACAGGAAAAAAGAACACGAGATCATCGTGGAAAGCTCGACCTC 572
|||||||||| | || ||||| | ||| || |||||| | ||||| ||||| | | |
Sbjct 655 TAGGGCTAAGTTCCATGATAGGAAGAGAGAGCATGAGATCGTAGTGGAGAGCTCTA-C-C 712
Query 573 GGGCCCTAAAGAGCCAGAGATGTGGATAAGCATAGACGGGATTGTGTTAATACAAGTCAA 632
||| | ||||| |||||||||||||| ||| |||| ||||| || || | || || |
Sbjct 713 GGG-GCGAAAGAACCAGAGATGTGGATTAGCGTAGATGGGATCGTTTTGGTTCAGGT-GA 770
Query 633 G-AATTTGCAATGGAAATTCAGAGGGAATCAGACAGTGCTGGTAGATAAACAACCTGTTC 691
| ||| |||| |||||||| |||||||| ||||| || |||| |||||| |||||||||
Sbjct 771 GAAATCTGCAGTGGAAATTTAGAGGGAACCAGACTGTTTTGGTTGATAAAGAACCTGTTC 830
Query 692 AAGTGTTTTGGGATGTGTATGATTGGTTGTTTAGCACGCCGGGGACAGGCCATGGTTTGT 751
||||||||||||||||||||||||||||||| ||||| || || || || || || ||||
Sbjct 831 AAGTGTTTTGGGATGTGTATGATTGGTTGTTCAGCACCCCCGGTACGGGGCACGGCTTGT 890
Query 752 TCATATTCAAACC 764
|||| || |||||
Sbjct 891 TCATCTTTAAACC 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5