BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480074
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04240.1 | Symbols: XERICO | RING/U-box superfamily protein ... 1083 0.0
> AT2G04240.1 | Symbols: XERICO | RING/U-box superfamily protein
| chr2:1461630-1462934 REVERSE LENGTH=849
Length=849
Score = 1083 bits (586), Expect = 0.0
Identities = 680/725 (94%), Gaps = 8/725 (1%)
Strand=Plus/Plus
Query 510 AGACAAACATCATTTCTACCGACAAAGATTGGATATCCAATCCAAGAATTGAAAGATGGG 569
|||| ||||||||||||||||||||||||| |||||| ||||||| || |||||||||||
Sbjct 121 AGAC-AACATCATTTCTACCGACAAAGATTTGATATCGAATCCAACAAGTGAAAGATGGG 179
Query 570 TTTATCAAGTCTTCCTGGTCCATCAGAAGGAATGTTATGTGTGATATTAGTAAACACAGC 629
| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 180 TCTATCAAGTCTTCCTGGTCCATCAGAAGGAATGTTATGTGTGATATTAGTTAATACAGC 239
Query 630 ATTATCGATCTCCATTGTTAAAGGCATTGTCCGATCAGTCCTTGGCATAGTAGGAATCAG 689
|||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 240 ATTATCGATCTCCATTGTCAAAGGCATTGTAAGATCATTCCTTGGCATAGTAGGAATCAG 299
Query 690 TCTCTCGCCGTCTTCATCCTCGCCTTCCTCAGTGACGGTATCTTCAGAGAA-TC--CAAC 746
||||||||||||||||||||||||||| || |||||||||||||||||||| || ||||
Sbjct 300 TCTCTCGCCGTCTTCATCCTCGCCTTCTTCGGTGACGGTATCTTCAGAGAATTCATCAAC 359
Query 747 TTCAGAGCCTTTTGATTTCCGGGTTTGCCAACCAGAGAGTTTCCTTGAGGAGTTCAGGAA 806
||||||| | |||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 360 TTCAGAGTCATTTGATTTCCGGGTCTGCCAACCAGAGAGTTACCTTGAGGAGTTCAGGAA 419
Query 807 CCGGACTCCAACACTGAGGTTTGAGAGCTTGTGCAGGTGCAAGAAACAGG-AGGACAACG 865
||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 420 CCGGACTCCGACACTGAGGTTTGAGAGCTTGTGCAGGTGCAAGAAACAGGCA-GACAATG 478
Query 866 AGTGTTCGGTGTGTCTGTCGAAATTCGAAGGGGATTCAGAGATCAACAAGCTAAAGTGTG 925
||||||| |||||| ||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 479 AGTGTTCTGTGTGTTTGTCGAAATTCCAAGGGGATTCAGAGATCAACAAGCTCAAGTGCG 538
Query 926 GCCATTTGTTTCACAAAACATGCTTGGAGAAATGGATAGACTATTGGAACATTACTTGCC 985
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 GCCATTTGTTTCACAAAACATGCTTGGAGAAATGGATAGACTATTGGAACATCACTTGCC 598
Query 986 CACTGTGTAGGACTCCTCTTGTTGTTGTGGCAGAAGACCATCAGCTTTCTTCTAATGTTT 1045
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 599 CATTGTGTAGGACTCCTCTTGTTGTTGTGCCAGAAGACCATCAGCTTTCTTCTAATGTTT 658
Query 1046 GGTGACTACTTTTCACTGTATAGGGTTTTTGTTTGGGTGTGTTTGTTGTGTAGAGCTACT 1105
||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||
Sbjct 659 GGTGACTGCTTTTCACTGTATAGGTTTTTTGTTTGAGTGTGTTTGTTGTGTACAGCTACT 718
Query 1106 TT-ACTATGAATTAGGCTGCATCGCGGTTGATTCTCAAACAGATTTAGACCGGGGATGGG 1164
|| ||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 719 TTTACTATGAATTAGGTTGCATCGCGGTTGATTCTCGAGCAGATTTAAACCGGGGATGGG 778
Query 1165 ATAATCTGATGTACatatatatatataCCCATGTGTAATGGAGCTCGTGTTTGAACATAG 1224
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 779 ATAATCTGATGTACATATATATATATACCCATGTGTA-TGGAGCTCTTGTTTGAACACAG 837
Query 1225 TTTTC 1229
|||||
Sbjct 838 TTTTC 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60391255635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5