BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480076
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04260.1 | Symbols: | pseudogene, BS1-related mitochondrial... 918 0.0
AT1G43910.1 | Symbols: | P-loop containing nucleoside triphosp... 501 4e-141
> AT2G04260.1 | Symbols: | pseudogene, BS1-related mitochondrial
protein, blastp match of 53% identity and 8.5e-45 P-value
to GP|17385707|dbj|BAB78658.1||AP003022 P0681B11.25 {Oryza
sativa (japonica cultivar-group)} | chr2:1470757-1471477 FORWARD
LENGTH=721
Length=721
Score = 918 bits (497), Expect = 0.0
Identities = 642/711 (90%), Gaps = 14/711 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGCTGCAATAGCTAATCACATGAACTACAATATCTATGATCTCCAGATTCAGAGT 60
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGTGGCTGCTATAGCTAATCACATGAACTGCAATATCTATGATCTCCAGATTCAGAGC 60
Query 61 GTTAGAGATGATGGTGAGTTGCGGGA-GATTCTTACCGCCACCAAGAACAGGTCAATTCT 119
|||| |||||||| |||||||| ||| | |||| ||||||||||| ||||| ||||||||
Sbjct 61 GTTAAAGATGATGCTGAGTTGC-GGAGGGTTCTCACCGCCACCAATAACAGATCAATTCT 119
Query 120 TCTCATTGAAGACATTGATTGTGG-AGCTGATGCATCTCGTAGACGCCAGACCAAAAATG 178
|||||||||||||||||||||||| | ||||| | |||||||||||||||||||||||||
Sbjct 120 TCTCATTGAAGACATTGATTGTGGTA-CTGATTCGTCTCGTAGACGCCAGACCAAAAATG 178
Query 179 AAGAAGATGTTGAGCTCCAAAAGCAAAAGAAGAAGCCTGACCTTGGGGTAAGTTGACAA- 237
||||||||| | || || ||||| |||| || |||||||||||||||||||||||| ||
Sbjct 179 AAGAAGATGATAAGGTCAAAAAGAAAAAAAAAAAGCCTGACCTTGGGGTAAGTTGA-AAT 237
Query 238 AATTCCTCTG-tt-t--ttttAATAACCTCTCTGTTTTTGAACCTTATGAATCTTCTTTC 293
||||||||| || | ||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 238 GATTCCTCTGTTTCTAATTTTATTAACCTCTCTGTTTTTGAACCTAATGAATCTTCTTTC 297
Query 294 TTGTGGACAGATATCTTTGTCTGGTCTATTGAACTTTGTAGACGGGCTTTGGTCGAGTTG 353
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 298 TTGTGGACAGATATCTTTGTCTGGTCTATTGAACTTTGTAGACGGTCTTTGGTCGAGCTG 357
Query 354 CGGAGAAGAAAAAATCATAATTTTCACTACTAATCACAAGGAGAAGCTCGACCCGGCGTT 413
|||||||||| ||||||||||||||| || ||| |||||||||||||||||||||| ||
Sbjct 358 TGGAGAAGAAAGAATCATAATTTTCACAACCAATTACAAGGAGAAGCTCGACCCGGCATT 417
Query 414 ACTTAGACCGGGAAGAATGGATGTTCACATTCTCATGGACAATTGTACTCCCTTTGTGTT 473
|| || || |||||||||||||||||||||||||||||| |||| ||||| ||||| ||
Sbjct 418 GCTGAGGCCCGGAAGAATGGATGTTCACATTCTCATGGACTATTGCACTCCATTTGTCTT 477
Query 474 CAAGAAGCTTGTGGCTATGTACCTTAAAACTGATGACCATGTCCTGTTTGATCCCATCGA 533
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 478 GAAGAAGCTTGTGGCTATGTACCTCAAAATTGATGACCATGTCCTGTTTGATCCCATTGA 537
Query 534 GAAACTTGTCATTGATGTGAGTGTAACTCCGGCTGAAGTCACGCAGCAGCTCATGGCGAG 593
||| |||||| |||| |||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct 538 GAAGCTTGTCCTTGAGGTGAGTGTAACTCCTGCTGAAGTCGCGCAGCAGCTCATGGTGAG 597
Query 594 TAAGAACGCTGATGTCGCGCTTAAAGGTCT-ACTCGAATTCCTCGAAAACAAGAAGAT-G 651
||||||| ||||| | ||||| |||||||| | |||||||| ||||||| |||||||| |
Sbjct 598 TAAGAACACTGATATTGCGCTCAAAGGTCTCA-TCGAATTCATCGAAAAAAAGAAGATAG 656
Query 652 AAGAAGGAAGAAGATGCCAAAGTTGAGGAAGAGGGTGAGATTGAAGATGCT 702
|| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 657 AA-AAGGAAGAAGTTACCAAAGTTGAGGAAGAGGGTGAGATTGAAGATGCT 706
> AT1G43910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:16655884-16657658
REVERSE LENGTH=1624
Length=1624
Score = 501 bits (271), Expect = 4e-141
Identities = 360/403 (89%), Gaps = 6/403 (1%)
Strand=Plus/Plus
Query 303 GATATCTTTGTCTGGTCTATTGAACTTTGTAGACGGGCTTTGGTCGAGTTGCGGAGAAGA 362
|||||||||||||||||||||||||||||| || || |||||||| ||||| ||||||||
Sbjct 1035 GATATCTTTGTCTGGTCTATTGAACTTTGTTGATGGACTTTGGTCAAGTTGTGGAGAAGA 1094
Query 363 AAAAATCATAATTTTCACTACTAATCACAAGGAGAAGCTCGACCCGGCGTTACTTAGACC 422
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1095 GAAAATCATAATTTTCACTACTAATCACAAGGAGAAGCTCGACCCGGCGTTGCTTAGACC 1154
Query 423 GGGAAGAATGGATGTTCACATTCTCATGGACAATTGTACTCCCTTTGTGTTCAAGAAGCT 482
||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 AGGACGGATGGATGTTCATATTCTCATGGACAATTGTACTCCCTTTGTGTTCAAGAAGCT 1214
Query 483 TGTGGCTATGTACCTTAAAACTGATGACCATGTCCTGTTTGATCCCATCGAGAAACTTGT 542
||||||| ||||||||||||| ||||| |||||| ||||||||||||| ||||| || |
Sbjct 1215 TGTGGCTTTGTACCTTAAAACCGATGAGCATGTCTTGTTTGATCCCATTGAGAAGCTCAT 1274
Query 543 -CATTGATGTGAGTGTA-ACTCCGGCTGAAGTCACGCAGCAGCTCATGGCGAGTAAGAAC 600
| |||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1275 TC-TTGAAGTGAGT-TCGACTCCCGCTGAAGTCACGCAGCAGCTCATGGCGAGTAAGAAC 1332
Query 601 GCTGATGTCGCGCTTAAAGGTCTA-CTCGAATTCCTCGAAAACAAGAAGATGAAGAAGGA 659
|||||| ||||||||||||| || || |||||| | || ||||||||| |||| ||||
Sbjct 1333 GCTGATATCGCGCTTAAAGGCCTTGCT-GAATTCTTGGAGAACAAGAAGTTGAAAAAGGG 1391
Query 660 AGAAGATGCCAAAGTTGAGGAAGAGGGTGAGATTGAAGATGCT 702
||||||| | | || ||||||||||| |||||||||||||||
Sbjct 1392 AGAAGATTCTAGTGTGGAGGAAGAGGGAGAGATTGAAGATGCT 1434
Score = 215 bits (116), Expect = 5e-55
Identities = 167/191 (87%), Gaps = 5/191 (3%)
Strand=Plus/Plus
Query 1 ATGGTGGCTGCAATAGCTAATCACATGAACTA-CAATATCTATGATCTCCAGATTCAGAG 59
||||| ||||| || |||||||| ||||| || | ||||||||||||| |||||||| ||
Sbjct 793 ATGGTAGCTGCCATTGCTAATCATATGAAGTATC-ATATCTATGATCTTCAGATTCAAAG 851
Query 60 TGTTAGAGATGATGGTGAGTTGCGGGAGATTCTTACCGCCACCAAGAACAGGTCAATTCT 119
|||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||||
Sbjct 852 TGTTAGAGATGATGGTGAGTTGCGGGAGATTCTTACTTCGACCAAGAACCGGTCGATTCT 911
Query 120 TCTCATTGAAGACATTGATTGTGGAGCTGATGCATCTCGTAGACGCCAGACCAA-AA-AT 177
||| |||||||| |||||||||||||||||||| ||||||||||| |||| || || |
Sbjct 912 TCTTATTGAAGATATTGATTGTGGAGCTGATGCTTCTCGTAGACGTCAGAGTAAGAAGAA 971
Query 178 G-AAGAAGATG 187
| |||||||||
Sbjct 972 GGAAGAAGATG 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5