BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480086
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04400.1 | Symbols: | Aldolase-type TIM barrel family prote... 2104 0.0
> AT2G04400.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr2:1531148-1533737 FORWARD LENGTH=1428
Length=1428
Score = 2104 bits (1139), Expect = 0.0
Identities = 1292/1364 (95%), Gaps = 18/1364 (1%)
Strand=Plus/Plus
Query 1 TTC-AAAGTTTGAAAC-tttttttttCCGGCAATGGAGGGACTAGTTCCGGTACAGAGAC 58
||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 TTCAAAAGTTCGAAACTTTTTTTTTTCCGGCAATGGAGGGACTAGTTCCGGTACAGAGAC 88
Query 59 TTCCGGTTAGAGTGGCTTCACCTTCTCTGTATCGGTGTAACAATTCTGTCTCAATCAGAC 118
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 TTCCAATTAAAGTGGCTTCACCTTCTCTGTATCGGTGTAACAATTCTGTCTCAATCAGAC 148
Query 119 GTTCAATTTCAGGTTTTGCCATGGACAGGAAGATAAACTTTAGGGCTCCGTCGCAATTCT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GTTCAATTTCAGGTTTTGCCATGGACAGGAAGATAAACTTTAGGGCTCCGTCGCAATTCT 208
Query 179 CGATCCGAGCTCAACAGTCGGATTTGAAGGAAAGCTTAGCTGTGTCTTCTTCATCAGTAG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CGATCCGAGCTCAACAGTCGGATTTGAAGGAAAGCTTAGCTGTGTCTTCTTCATCAGTAG 268
Query 239 AGGATAAAGGAAATGCTCTTAGAATCAAGGAATGGGAAGTGGAGATGTATCAGGAGGAAT 298
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 269 AGGATAAAGGAAATGTTCTTAGAATCAAGGAATGGGAAGTAGAGATGTATCAGGAGGAAT 328
Query 299 TAGCCATTAGTCAAGGTATTAGGATAAGGAGAAAACCACCGAGTAAGGCTCCTTTGGGAT 358
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 329 TAGCTATTAGTCAAGGTATTAGGATAAGGAGAAAACCACCAAGTAAGGCTCCTTTGGGAT 388
Query 359 ACTCTGGGCCATTTGAGTTGAGATTGCATAATGAA-GATGCTGATTCTCCTCGTAATATC 417
||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 389 ACTCTGGACCATTTGAGTTGAGATTGCATAAC-AATGATGCTGATTCTCCTCGTAATATC 447
Query 418 TTGGAGGAGATTACATGGTACAAAGACGAAGAAGTTTCGCGGATGAAGGAACTAAACCCG 477
||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||| |||
Sbjct 448 TTGGAGGAGATCACATGGTACAAAGACGTAGAAGTTTCCCGGATGAAGGAGCTAAATCCG 507
Query 478 CTTGACGCGCTGAAGAAAGCTGTAGAGGATGCTCCTCCAACCAGGGATTTTGTCGGGGCG 537
||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 508 CTTGACGTGCTGAAGAAAGCTGTAGAGGATGCTCCTCCTACTAGGGATTTTGTTGGGGCT 567
Query 538 CTTAGGATGGCTCATAAAAGAACTGGGTTCCCTGGGTTGATCGCTGAGGTTAAGAAGGCT 597
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 568 CTTAGGATGGCTCATAAAAGAACTGGCTTCCCTGGCTTGATAGCTGAGGTTAAGAAGGCT 627
Query 598 TCTCCAAGTAGAGGAATCTTAAAAGAAAATTTTGACCCGGTCGAGATTGCTCAAGCATAT 657
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 628 TCTCCAAGTAGAGGAATCTTAAAAGAGAATTTTGACCCGGTCGAGATTGCTCAAGCTTAT 687
Query 658 GAAAAAGGCGGAGCAGCATGCCTCAGCGTTTTGACAGACCAGAAGTATTTCCAGGGAGGC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GAAAAAGGCGGAGCAGCATGCCTCAGCGTTTTGACAGACCAGAAGTATTTCCAGGGAGGC 747
Query 718 TTTGAAAACTTGGAAGCAATTAGGAGCGCTGGTGTGAAGTGTCCACTATTATGCAAAGAG 777
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 748 TTTGAAAACTTGGAAGCAATAAGGAGCGCTGGTGTGAAGTGTCCACTATTATGCAAAGAG 807
Query 778 TTTGTTGTAGATCCATGGCAGATCTACTATGCCCGGACTAAAGGCGCGGACGCAGTATTG 837
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||
Sbjct 808 TTTGTTGTAGATCCATGGCAGATCTACTATGCTCGGACTAAAGGCGCAGATGCAGTACTG 867
Query 838 CTTATTGCTGCTGTATTGACTGACCTAGAAATAACCTACTTGCTTAAGATCTGCAAGAAG 897
|||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||
Sbjct 868 CTTATTGCTGCTGTATTGGCTGACCTAGAAATAACCTTCTTGCTTAAGATTTGCAAGAAG 927
Query 898 CTGAGTTTGGCTGCACTTGTTGAGGTACATGATGAGAGAGAGATGGGTCGTGTGCTTGGA 957
|| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 928 CTTAGCTTGGCTGCCCTTGTTGAGGTACATGATGAGAGAGAGATGGGTCGTGTACTTGGA 987
Query 958 ATAGAAGGAATCGAGCTTGTTGGCATCAATAACCGAAGCCTTGAAACATTTGAAGTGGAC 1017
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 988 ATAGAAGGAATCGAGCTTGTTGGCATCAATAACCGAAGTCTTGAAACATTTGAAGTGGAC 1047
Query 1018 ATCAGTAACACAAAGCAGCTTCTTGAAGGAGAGCATGGTAGACAAATCCGTGAGAGAGAC 1077
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 ATCAGTAATACAAAGAAGCTTCTTGAAGGAGAGCATGGTAGACAAATCCGTGAGAGAGAC 1107
Query 1078 ATGATTGTGGTTGGCGAATCTGGTCTGTTTACACCAGATGACATTGCCTATGTACAAGCT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 ATGATTGTGGTTGGCGAATCTGGTCTGTTTACACCAGATGACATTGCCTATGTACAAGCA 1167
Query 1138 GCTGGAGTTAAAGCGGTTTTGGTTGGTGAGTCCATTGTCAAGCAGAACGACCCTGAGAAA 1197
|| ||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 1168 GCCGGAGTCAAAGCAGTTTTGGTTGGAGAATCCATTGTGAAGCAGAACGACCCTGAGAAA 1227
Query 1198 GGAATAGCTGGACTTTTTGGCAGGAACATTTCTCATACTTAGA-----TA-CAT----C- 1246
||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 1228 GGAATAGCTGGACTTTTTGGCAGGAACATTTCTCATACTTAGAGACCATATCATAATACA 1287
Query 1247 TC-C-AAATATGTTTCCTAGTACATTTGTTT-GTATCTTGTTTTGTGAGTATTGAGGAAA 1303
|| | ||||| |||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 1288 TCTCCAAATACGTTTCCTAGTACATTTGTTTTGTATCTTGCTCTGTGAGTATTGAGGAAA 1347
Query 1304 GACTAGAAAGGCTTGTTGACTCTGATGTTTCAGACATTTTCAAA 1347
||||||||||| |||||| |||||||||| |||||||||||||
Sbjct 1348 GACTAGAAAGGTTTGTTGGTTCTGATGTTTAAGACATTTTCAAA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5