BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480088
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04430.1 | Symbols: atnudt5, NUDT5 | nudix hydrolase homolog... 1413 0.0
> AT2G04430.1 | Symbols: atnudt5, NUDT5 | nudix hydrolase homolog
5 | chr2:1538901-1541094 FORWARD LENGTH=1019
Length=1019
Score = 1413 bits (765), Expect = 0.0
Identities = 890/950 (94%), Gaps = 10/950 (1%)
Strand=Plus/Plus
Query 2 GACATGGGTTTGAC-AAAATCATTGCTTTTCTTGGTGTTTTGTTGTCAAAGATACTGTAG 60
|||||||||||||| |||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 41 GACATGGGTTTGACAAAAAACTTTGCTTTTCTT-GTGTTTTGTTGTCAAAGATACTGTAG 99
Query 61 CATGGACGGTGAAG-GTCAGCAAATTTCATTACTTGATGGAGTAGAAGACAGATTTGGAG 119
|||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||
Sbjct 100 CATGGACGGTGAAGCTTTTG-AAATCTCATTACTTGATGGAGAAGAAGACAGATTTGGAG 158
Query 120 GTATTGTGGTGAACTTGATGGAAGTGGAATCCATGAATGTTGAG-GATTTTGATGCAAAG 178
||| |||||||||||||||||||||||||||||||| | ||| | ||||||||| |||||
Sbjct 159 GTACTGTGGTGAACTTGATGGAAGTGGAATCCATGACTATTG-GTGATTTTGATTCAAAG 217
Query 179 CTTGATAATTCACTTAAGGCTTGGAAGGATCAGGGGAAGAAGGGGGTTTGGATAAAGCTG 238
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 218 CTTGATGTTTCACTTAAGGCTTGGAAGGATCAGGGGAAGAAGGGGATTTGGATAAAGCTG 277
Query 239 CCTCGTGAGCTATCTAGTCTTGTTGACACTGCAATTAAGAAAGGGTTTACATACCACCAT 298
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 278 CCTAGTGAGCTATCTAGTCTTGTTGATACTGCAATTAAGAAAGGGTTTACATACCACCAT 337
Query 299 GCCGAGAATGAATACGTGATGCTTACATCTTGGCTTCCCCAGCCACCTAGCACTCTTCCT 358
||||||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 338 GCCGAGAATGAGTATGTGATGCTTACATTTTGGCTTCCAGAGCCACCTAGCACTCTTCCT 397
Query 359 TGCAATGCTTCTCATCGTATTGGGATCGGTGCTTTTGTCCTGAACAAGAACGGAGAGATG 418
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 398 TGCAATGCTTCTCATCGTATTGGGATCGGTGCTTTTGTCCTAAACAAGAACGGAGAGATG 457
Query 419 CTTGTGGTTCAGGAGAATAGTGGATATTT-AAGAGATAACAATGTGTGGAAGGTGCCTAC 477
||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||
Sbjct 458 CTTGTGGTTCAGGAGAATAGTGGATATTTCAA-AGATAAAAATGTCTGGAAGGTGCCTAC 516
Query 478 CGGTACTATTAAAGAGGGTGAGAGTATCTGGGCTGGAGCAGTTAGGGAAGTGAAAGAAGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CGGTACTATTAAAGAGGGTGAGAGTATCTGGGCTGGAGCAGTTAGGGAAGTGAAAGAAGA 576
Query 538 AACTGATATTGATGCAGAATTTGTAGAAGTCCTGGCTTTCATGGAAAGCCACCAAGCAGT 597
|||||||||||||||||| |||||||||||| || ||||||||||||| |||||||||||
Sbjct 577 AACTGATATTGATGCAGAGTTTGTAGAAGTCTTGTCTTTCATGGAAAGTCACCAAGCAGT 636
Query 598 CTGGCAAAGAAAAACGGATATATTTTTCGTCTGTGAGTTGGAAGCAAGCACATTTGAAAT 657
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 637 GTGGCAAAGAAAAACGGATATATTTTTCGTCTGCGAGTTGGAAGCAAGAACTTTTGAAAT 696
Query 658 CAAGAAACAAGACTCTGAAATCTATGCTGCTAAGTGGATGCCGGTTGAGGAATACGTAAA 717
| |||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 697 CCAGAAACAAGATTCTGAGATCCATGCTGCTAAGTGGATGCCGGTTGAGGAATACGTAAA 756
Query 718 CCAACCCTTTCACAGCAAGGAGGGGAACGAAATGTTTAAGTTAATAGCTAACATCTGCTT 777
|||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 757 CCAACCCTATCACAACAAGGAGGGGAACGAGATGTTCAAGTTAATAGCTAACATCTGCTT 816
Query 778 AAAGAGGTCGCGGGACAAGTACACCGGCTTCGTTCTTACTACGGATTCA-CCAAAAAAGA 836
||| ||||||||||| |||||||| |||||||||||||||||| ||||| ||||||| ||
Sbjct 817 AAAAAGGTCGCGGGAGAAGTACACGGGCTTCGTTCTTACTACGAATTCAGCCAAAAA-GA 875
Query 837 GCCTTTACTGTAGTGTCGATCACGCCAACCTCCTGAACGAAACAGCTGACCAAGCCTCCA 896
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 876 GCCTTTACTGCAGCGTCGATCACGCCAACCTCCTGAAGGAAACAGCTGACCAAGCCTCCA 935
Query 897 CCTCTCTCTCTGACTAGTCAGAATGTGTTTCTGCTTCTTTGTTTAACGTC 946
||||||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 936 CCTCTCTCTCTGACTAGTCGGAAAGTGTTTCTGCTTCTTTGTTTCACGTC 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46265649387
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5