BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480089
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04480.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 737 0.0
> AT2G04480.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G35870.1);
Has 38 Blast hits to 38 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1554282-1555514
REVERSE LENGTH=744
Length=744
Score = 737 bits (399), Expect = 0.0
Identities = 508/560 (91%), Gaps = 10/560 (2%)
Strand=Plus/Plus
Query 232 GTTGAAATGAATCTTGAGAAGAAAATAGAAGAAGAGTAC-TTCTTGATGAGTTTGGCTTC 290
||||||||||||| |||||| || ||||||||||| ||| || |||||||||||||||||
Sbjct 190 GTTGAAATGAATCCTGAGAATAACATAGAAGAAGAATACGTT-TTGATGAGTTTGGCTTC 248
Query 291 AATTTTGTTGAAGAGGCCTTTTTCATGGGTCTCTCTCCTCGCCCCTCCACTTCTTCATAT 350
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 249 AATTTTGTTGAAGAGACCTTTTTCATGGGTCTCTCTCCTCGCCCCTCCACTTCTTCACAT 308
Query 351 CTTTGGCCTTCG-TTCCTTACACCTCCTCCTTACTTCTGCTGCTTTGTTCTTCTCCTCTT 409
| ||||| |||| || |||||| ||||||||||||| | |||||||||||||||||||||
Sbjct 309 CCTTGGCATTCGCTT-CTTACATCTCCTCCTTACTTGTACTGCTTTGTTCTTCTCCTCTT 367
Query 410 TCTTCTTCCCAATCTCACGTACTCATTCTTCACTCCAACCATCAAAACAAGATCAAGATC 469
|||||||||||||||||| | ||||||||||| | ||| |||||||||||||||||||||
Sbjct 368 TCTTCTTCCCAATCTCACTTCCTCATTCTTCAATACAATCATCAAAACAAGATCAAGATC 427
Query 470 AAGAACGAGACTATATTGCCACTGAAGATATTACCGGGAAATCCGAGGATAACCTTGAGA 529
||||| || ||||||||||||| ||||||||||||||||||| ||||| ||||| ||||
Sbjct 428 AAGAAGGACACTATATTGCCACCAAAGATATTACCGGGAAATCGGAGGAAAACCTGGAGA 487
Query 530 CTACCAATGAAGAGGATGATGATGGCGCAATACCC-GATGATGAGAGTCTCATAGAGTTG 588
||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||| ||
Sbjct 488 AGACCAATGAAGAGGATGACGATGGCGCAAT-CCCGGATGATGAGAGCCTCATAGAGCTG 546
Query 589 TCTTTACCGAGTGGTCACTATGTTGGTCACCACTACACTAGTAACAAGAACAATCTCTGT 648
|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |
Sbjct 547 TCTTTACCGAGTGGTCACTACCTTGGTCACCACTACAATAGTAACAAGAACCATCTCTAT 606
Query 649 CTCCACAACAAGGTTCAAGATTTCCCGCTCTTTGACCTATT-AACTG-AGTTAAATGATT 706
|||||||||| || ||||||||| ||||||||| ||||| || || | || || ||||
Sbjct 607 ATCCACAACAAAGTACAAGATTTCAGGCTCTTTGATCTATTGAA-TGAAATT-AACGATT 664
Query 707 TTATCGAAGAAGATAATCTCATTGAAATCGATATCTCCATCGGATCCATTAAGTATTCAA 766
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TTACCGAAGAAGATAATCTCATTGAAATCGATATCTCCATCGGATCCATTAAGTATTCAA 724
Query 767 GGTTTGAGATCAAAGCTTGA 786
||||||||||||||||||||
Sbjct 725 GGTTTGAGATCAAAGCTTGA 744
Score = 176 bits (95), Expect = 3e-43
Identities = 106/111 (95%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 11 ATGGTGGCACATGGCTAACCAACTCTCTATGCCTTGGAGAGTGTACAAAGTTCAAAGCTC 70
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGCACATGGCTTACCAACTCTCTATGCCTTGGAGAGTGTACAAAGTTCAAAGCTC 60
Query 71 AAGGGTTTTG-GCCTTTGAAGTCTCCAAGAGAATCAATTTCAGATGCCCAA 120
|||||||||| | ||||||||||||||||||||||| |||||||||| |||
Sbjct 61 AAGGGTTTTGTGACTTTGAAGTCTCCAAGAGAATCAGTTTCAGATGCTCAA 111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5