BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480090
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04515.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 989 0.0
AT2G04495.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 656 0.0
> AT2G04515.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G04495.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr2:1573637-1574478 FORWARD LENGTH=842
Length=842
Score = 989 bits (535), Expect = 0.0
Identities = 695/769 (90%), Gaps = 23/769 (3%)
Strand=Plus/Plus
Query 23 AGATGGAATCTCGAAAACAAGAAAGAAGCGTGAAGGAGATGAAAGTAGTCACTAAGATCA 82
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 83 AGATGGAATCTCAAAAACAAGAAAGAAGCGTGAAGGAGATGAAAATAGTCACTAAGATCA 142
Query 83 TAGCATTGGCATCCATTTTCTCTTTTATAGTACTATCTTACTCTTCCTTAATCTCTTCTC 142
||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 143 TAGCATTTGCATCCATTTTCTC-ATT-TA-TACTATCTTACTCTTCCTTAATCTCTTCTC 199
Query 143 TTCAACAAAGACTCCATTTGCTTTCCATGTATAGCAACCTTGTGGACAAGAAGTACATGT 202
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 200 TTCAACAAAGACTCCATTTGCTTGCCATGTATAGCAATCTTGTGGACAAGAAGTACATGT 259
Query 203 TCTTGTTATGCAATGGGATTGTGTGCTTTATCGTGGGGAGTTTCCGTGGGAATTCTGAAT 262
||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |
Sbjct 260 TCTTGTTATGCAATGGGATTGTGGGCTTTATCTTGGGGAGTTTCCATGGGAATTCTGACT 319
Query 263 CCTTTTCGCACGGTAAAGCTTTTAACATCGTTGAACAAACGAAAGAAGTAAGGG-TCAAA 321
|| |||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||
Sbjct 320 CCCTTTCGCACGGTAAAGCCATTAACATCGTTGAACAAACCAAAGAAGT-AGGGATCAAA 378
Query 322 GACATGAGGGAAACAAAAGTCAAGAAAGTAGTGGCACTACTTgaag-aagaaaatgtttc 380
||| | | |||||||||||||| |||||||||||| ||||||||| ||| ||||||||
Sbjct 379 GACTTAAAAGAAACAAAAGTCAATAAAGTAGTGGCATTACTTGAAGAAAG-TAATGTTTC 437
Query 381 taaagaagaagaaggaagagttgttttat-t-tag-ag--g-agaagaagTTGCATTGGT 434
||||||||||||||||||||||||||||| | || || | ||||||||||||||||||
Sbjct 438 TAAAGAAGAAGAAGGAAGAGTTGTTTTATCTAGAGAAGAAGAAGAAGAAGTTGCATTGGT 497
Query 435 TGTTAAGGAAGATGAAGGAATATTAGTACAAGACCTCGCTATCGTTAGAATCGATAG-TT 493
||||||||||||||| |||||| |||||||||||||| | ||| |||| | ||| | |
Sbjct 498 TGTTAAGGAAGATGAGGGAATACTAGTACAAGACCTCTCAATCACTAGACTAGAT-GATC 556
Query 494 ATCATGATGACGATGAGATTAACGATAGTTTATTAAGTTCGGAAGATTTGAACAAGAAAT 553
|| |||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 557 ATGATGATGACGATGCGATAAATGATAGTTTATTAAGTTCAGAAGATTTGAACAAGAAAT 616
Query 554 GTGAGGATTTCATCAGGAAGATGAAGGCAGAGATTCGATTCGGCAAGAGAAGCATATAA- 612
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 617 GTGAGGATTTCATCAGGAAGATGAAGGCAGAGATTCGATACGGCAAGAGAAGTATATAAC 676
Query 613 TTTTATGACTTTT-T-AGAGTTTAGTTAAACTATCTTTAGTATTCATATTAGGCAGGAGA 670
|||| ||| |||| | | | ||||||||| ||||||||||||||||| |||||||||
Sbjct 677 TTTTTTGAGTTTTGTTA-ACA--AGTTAAACTGTCTTTAGTATTCATATTCGGCAGGAGA 733
Query 671 AGTATATAATTTTCTCTCTTACGACGAA-TGGATTCTGTATTTTTGGTGCCCAGTTTTAT 729
|||||||||||||||||||| ||| || | |||||||||||||||||||||| ||||||
Sbjct 734 AGTATATAATTTTCTCTCTTTGGAC-AAGTAGATTCTGTATTTTTGGTGCCCACTTTTAT 792
Query 730 GTATGTGGTCCATATGAATCCATGCAACATAATGCTTTCTATGTCAAGC 778
|||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 793 GTATGTCATCCATATGAATCCATGCAACATAATGCTTTCTATATCAAGC 841
> AT2G04495.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G04515.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr2:1564166-1565106 FORWARD LENGTH=941
Length=941
Score = 656 bits (355), Expect = 0.0
Identities = 542/625 (87%), Gaps = 41/625 (7%)
Strand=Plus/Plus
Query 23 AGATGGAATCTCGAAAA-CAAGAAAG-AAGCGTGAAGGAGATGAAAGTAGTCACTAAGAT 80
|||||||||| | |||| | || ||| ||| |||||||||| ||| |||| ||||||||
Sbjct 44 AGATGGAATC-CCAAAAGCTAGGAAGAAAG-ATGAAGGAGATAAAAATAGTAACTAAGAT 101
Query 81 CATAGCATTGGCATCCATTTTCTCTTTTATAGTACTATCTTACTCTTCCTTAATCTCTTC 140
|||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 102 CATAGCATTGGCATCCATTTTCTC-ATT-TA-TACTATCTTACTCTTCCTTAATCTCTTC 158
Query 141 TCTTCAACAAAGACTCCATTTGCTTTCCATGTATAGCAACCTTGTGGACAAGAAGTACAT 200
|||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 159 TCTTCAGCAAAGACTCCATTTGCTTTCAATGTATAGCAATCTTGTGGACAAGAAATACAT 218
Query 201 GTTCTTGTTATGCAATGGGATTGTGTGCTTTATCGTGGGGAGTTTCCGTGGGAATTCTGA 260
||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 219 GTTCTTGTTATGCAATGGGATTGTGGGCTTTATCTTGGGGAGTTTCCATGGGAATTCTGA 278
Query 261 ATCCTTTTCGCACGGTAAAGCTTTTAACATCGTTGAACAAACGAAAGAAGTAAGGG-TCA 319
|||| ||||||| |||||||| |||||||| |||||||||||||||||||| ||| |||
Sbjct 279 ATCCCTTTCGCAGGGTAAAGCCATTAACATCATTGAACAAACGAAAGAAGTA-GGGATCA 337
Query 320 AAGACATGAGGGAAACAAAAGTCAAGAAAGTAGTGGCACTACTTgaagaagaaaa-tgtt 378
||||| ||| ||||||||| ||||||| ||||||||| ||||||||||| || | ||||
Sbjct 338 AAGACTTGAAAGAAACAAAACTCAAGAAGGTAGTGGCATTACTTGAAGAA-AAGAGTGTT 396
Query 379 tctaaagaagaagaag--gaaga-g------------ttgttttatttagagga---gaa 420
|||||||||||||||| ||||| | ||||||||||||||||| |||
Sbjct 397 TCTAAAGAAGAAGAAGAAGAAGAAGAAGGAGGAAGAGTTGTTTTATTTAGAGGAATCGAA 456
Query 421 gaagT-----TG-CATTGGTTGTTAAGGAAGATGAAGGAA-TATTAGTACAAGACCTCGC 473
|||| || ||||||||||| ||| |||||| |||| |||||||||||||||||||
Sbjct 457 GAAGAAGAAGTGTCATTGGTTGTTGAGGTAGATGA-GGAAATATTAGTACAAGACCTCGC 515
Query 474 TATCGTTAGAATCGATAGTT-ATCATGATGACGATGAGATTAACGATAGTTTATTAAGT- 531
|||| ||||| | ||| | | ||||||||||||| ||||| || ||||||||| |||||
Sbjct 516 TATCATTAGAGTAGAT-GATCATCATGATGACGAAGAGATAAATGATAGTTTACTAAGTG 574
Query 532 TCGGAAGATTTGAACAAGAAATGTGAGGATTTCATCAGGAAGATGAAGGCAGAGATTCGA 591
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 575 TCG-AAGATTTGAACAAGAAATGTGAGGATTTCATCAGGAAGATGAAAGCAGAGATTCAA 633
Query 592 TTCGGCAAGAGAAGCATATAATTTT 616
||||| |||||||| ||||||||||
Sbjct 634 TTCGGGAAGAGAAGTATATAATTTT 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5