BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480092
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04530.1 | Symbols: CPZ, TRZ2 | Metallo-hydrolase/oxidoreduc... 1827 0.0
> AT2G04530.1 | Symbols: CPZ, TRZ2 | Metallo-hydrolase/oxidoreductase
superfamily protein | chr2:1576709-1578741 FORWARD LENGTH=1294
Length=1294
Score = 1827 bits (989), Expect = 0.0
Identities = 1161/1242 (93%), Gaps = 20/1242 (2%)
Strand=Plus/Plus
Query 1 AAAGGCCGTTCTTTGCATTTTCTATCGTTTCATCTTTCATGTCTGAGTGA-AGTAGGAAA 59
||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 16 AAAGGCCGTTCTTTGCATTTTCTATCG-------TTTCATGTCTGAGTGACAG-AGGAAA 67
Query 60 CCCCAAAAACCTCTGTAAAA-C-C-CAGAA-AATGCAGC--T-TTCTTCGTTTCCAATTT 112
||||||||||||| |||||| | | || || |||||||| | |||||||||||||||||
Sbjct 68 CCCCAAAAACCTCCGTAAAACCTCACAAAAGAATGCAGCTTTCTTCTTCGTTTCCAATTT 127
Query 113 CACCTTCCAAAATCTTCCCTTTCACCAAGTACCATGGCCCTCCAGTGATTATTCACCAGC 172
||||| ||||||||||||||| |||||| ||||| ||||||||||||| ||||||||
Sbjct 128 CACCTCCCAAAATCTTCCCTTCCACCAAACACCATAAACCTCCAGTGATTACTCACCAGC 187
Query 173 TCGCTGCACAGATACAGAGCCACCGTAGCA-ATTTCGTGAGTCCTGCCAAAGTCTCTGGC 231
|||| ||||||||||||||| ||||||| | ||||||||||||| | |||||||||||||
Sbjct 188 TCGCCGCACAGATACAGAGCAACCGTAG-ACATTTCGTGAGTCCCGTCAAAGTCTCTGGC 246
Query 232 TATTTCTCATCGATTAGCCGAGCAATTGAGGAAGAAGAAGAGTATCGGAAAGCACGCGCC 291
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 247 TATTTCTCATCGATTAGCCGAGCTATTGAGGAAGAAGAAGAGTATCGGAAAGCACGCGCT 306
Query 292 GCCGTTAACCGAAAAGGCGTCGAATTGGAGAGTTATGCAATTGAGGGGATTTCTGTAGGT 351
|| || ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 307 GCAGTGAACCGTAAAGGTGTCGAATTGGAGAGTTATGCAATTGAAGGGATCTCTGTAGGT 366
Query 352 GGGCATGAGACTTGTGTTATCGTCCCTGAGCTCAAATGTGTGTTTGATATTGGGAGGTGC 411
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 367 GGGCACGAGACTTGTGTTATCGTCCCTGAGCTCAAATGTGTCTTTGATATTGGGAGGTGC 426
Query 412 CCTTCTCGTGCTATTCAGCAGAAGTTTCTTTTTATCACTCATGCTCATCTTGATCATATT 471
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 427 CCTTCTCGTGCTATTCAGCAGAAGTTTCTTTTTATCACTCATGCCCATCTTGACCATATC 486
Query 472 GGAGGGCTACCGATGTATGTAGCGAGTCGTGGTTTATACAATCTTGAGCCACCGAAAATA 531
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 487 GGAGGGCTTCCAATGTATGTAGCGAGCCGTGGTTTATACAATCTTGAGCCACCGAAAATA 546
Query 532 TTCGTGCCACCATCTATTAAAGAAGATGTTGAGAAACTTCTTGAGATTCACAGGACTATG 591
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTTGTGCCACCATCTATTAAAGAAGATGTTGAGAAACTTCTTGAGATTCACAGGACTATG 606
Query 592 GGTCAAGTAGAGCTGAATGTAGAACTT-ATTCCACTCGATGTAGGTGAAACATATGAGTT 650
|||||||||||| ||||||||||| || || ||||| | |||||||||||||||||||||
Sbjct 607 GGTCAAGTAGAGTTGAATGTAGAA-TTGATACCACTTGCTGTAGGTGAAACATATGAGTT 665
Query 651 GCGGAATGACATTGTTGTTAGACCGTTTGCAACTCACCACGTTATACCGAGTCAGGGTTA 710
||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 666 GCGCAATGACATTGTTGTTAGACCATTTGCAACTCACCATGTTATACCAAGTCAGGGTTA 725
Query 711 TGTCATTTACTCGGTGAGGAAGAAGCTGCAGAAGCAATATGCTCACCTCAAAGGCAAACA 770
|||||| || ||||| ||||||||| |||||||||| ||||||||||||||||| |||||
Sbjct 726 TGTCATCTATTCGGTCAGGAAGAAGTTGCAGAAGCAGTATGCTCACCTCAAAGGAAAACA 785
Query 771 GATAGAAAAGATTAAAAAGTCTGGCGTCGAGATTACTGACACGATATTATCCCCTGAGAT 830
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 786 GATAGAAAAGATTAAAAAGTCTGGCGTCGAGATTACGGACACGATATTATCCCCCGAGAT 845
Query 831 AGCCTTCACTGGAGATACAACTGCAGAGTATATGCTTGACCCTCGTAACGCTGATGCACT 890
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 846 AGCCTTCACTGGAGATACAACTTCAGAGTATATGCTTGACCCTCGTAATGCTGATGCGTT 905
Query 891 GAGGGCAAAAGTTCTTATAACCGAGGCAACTTTCTTGGATGAAAGTTTTAGCACTGAGCA 950
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 906 GAGGGCAAAAGTTCTTATAACTGAGGCAACTTTCTTGGATGAAAGTTTTAGCACTGAGCA 965
Query 951 TGCGCAGGCACTCGGTCACACTCATATATCTCAGATTATTGAGAATGCAAAGTGGATCCG 1010
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TGCGCAAGCACTCGGTCATACTCATATATCTCAGATTATTGAGAATGCAAAGTGGATCCG 1025
Query 1011 AAGCAAAACTGTATTATTGACGCATTTCTCATCACGTTACCATGTAGAGGAAATCCGCGA 1070
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1026 GAGCAAAACTGTATTATTGACGCATTTCTCATCACGTTACCATGTAGAGGAAATCCGTGA 1085
Query 1071 AGCTGTGCTTAAGTTGCAATCAAAAGTATCCGCAAAAGTCATTCCTCTTACAGAAGGTTT 1130
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1086 AGCTGTGCTTAAGTTGCAATCGAAAGTATCCGCAAAAGTCATTCCTCTTACAGAAGGTTT 1145
Query 1131 CAGGTCAAGATATTCTTAAAAGAGCTCGAAGGATATTGCAAGCAAAAGTAGGTATTTGAA 1190
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1146 CAGGTCAAGATATTCTTAAAAGAGCTTAAAGGATATTGCAAGCAAAAGTAGGCATTTGAA 1205
Query 1191 ACATCTTTGTCTGTAATTTCTTAGGGAACTCGCTAATGTAAG 1232
|||||||||||||||||||| |||||||||||||||||||||
Sbjct 1206 ACATCTTTGTCTGTAATTTCATAGGGAACTCGCTAATGTAAG 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60541857270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5