BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480093
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04540.1 | Symbols: | Beta-ketoacyl synthase | chr2:1581416... 2425 0.0
AT2G04530.1 | Symbols: CPZ, TRZ2 | Metallo-hydrolase/oxidoreduc... 63.9 4e-09
> AT2G04540.1 | Symbols: | Beta-ketoacyl synthase | chr2:1581416-1584688
REVERSE LENGTH=1544
Length=1544
Score = 2425 bits (1313), Expect = 0.0
Identities = 1453/1521 (96%), Gaps = 7/1521 (0%)
Strand=Plus/Plus
Query 1 CCCATCATCGCCGTCGTCTCCGTCACGGTCGCTGTGAAATGGCGACCTCTTATCTCCGTA 60
|||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct 16 CCCATCATCGCCGTCGTCTCCGTCACCGTCGCTGTGAAATGGCGACATCTAATCTCCGTA 75
Query 61 GACACCTGAGCTCAAGTCGTCTCCGCTTGACCCGCTTCATCACTACTTCTTC-TC--ATC 117
||||| ||||| ||||||| |||||||| | |||||||||| |||||||||| || |||
Sbjct 76 GACACTTGAGCGCAAGTCGCCTCCGCTTAAACCGCTTCATCTCTACTTCTTCTTCTTATC 135
Query 118 CTTCACATCGCCGTGTTGTTGTCACTGGTCTAGGCATGGTGACTCCACTTGGAAGAGGCG 177
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 136 ATTCACATCGCCGTGTTGTTGTCACTGGTCTAGGCATGGTGACTCCACTTGGTAGAGGCG 195
Query 178 TTGAAACAACATGGAGGCGTTTAATTGATGGAGAATGTGGGATAAGAGGATTGACTCTTG 237
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 196 TTGAAACAACGTGGAGGCGTTTAATTGATGGAGAATGTGGGATTAGAGGATTGACTCTTG 255
Query 238 ATGATCTCAAGATGAAGTCTTTTGATGAAGAGACAAAGTTATATACTTTTGGTCAGCTTT 297
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 256 ATGATCTCAAGATGAAGTCTTTTGATGAAGAGACAAAGTTATATACTTTTGATCAGCTTT 315
Query 298 CTTCTAAAGTTGCTGCTTTTGTGCCGTATGGATCAAACCCTGGTGAATTTGATGAGGCCC 357
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 316 CTTCTAAAGTTGCTGCTTTTGTGCCTTATGGATCAAACCCTGGTGAATTTGATGAAGCCC 375
Query 358 TTTGGCTAAACTCTAAGGCAGTTGCGAATTTTATCGGATATGCTTTATGTGCTGCTGATG 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 376 TTTGGCTAAACTCTAAGGCAGTTGCGAATTTTATCGGATATGCTGTATGTGCTGCCGATG 435
Query 418 AAGCCTTGAGAGATGCAGAGTGGTTACCAACTGAGGAGGAAGAAAAAGAAAGAACAGGAG 477
|||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 436 AAGCTTTGAGAGATGCAGAGTGGTTACCAACTGAAGAAGAAGAAAAAGAGAGAACAGGAG 495
Query 478 TCTCTATTGGTGGTGGAATTGGAAGTATAAGTGATATTGTGGAGGCAGCGCAGCTGATTT 537
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 496 TCTCTATTGGTGGTGGAATTGGAAGTATATGTGATATTGTGGAGGCAGCGCAGCTGATTT 555
Query 538 GTGAAAAGAGGCTACGGCGGCTTAGTCCGTTTTTCATTCCAAAAATATTGGTAAACATGG 597
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GTGAAAAGAGGCTGCGGCGGCTTAGTCCGTTTTTCATTCCAAAAATATTGGTAAACATGG 615
Query 598 CATCTGGTCATGTGAGCATGAAGTATGGATTTCAGGGGCCAAACCATGCTGCTGTGACAG 657
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 616 CATCTGGTCATGTGAGCATGAAGTATGGATTTCAGGGGCCAAATCATGCTGCTGTGACAG 675
Query 658 CTTGCGCAACTGGTGCACACTCTATAGGGGATGCCACTAGGATGATTCAATTTGGAGATG 717
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 676 CTTGCGCAACTGGTGCACATTCTATAGGCGATGCCACTAGGATGATTCAATTTGGAGATG 735
Query 718 CAGATGTTATGGTGGCAGGTGGAACTGAGTCCAGCATTGATGCTCTGTCTGTTGCTGGAT 777
|||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||
Sbjct 736 CAGATGTTATGGTGGCTGGTGGAACTGAGTCTAGCATTGATGCTCTGTCCGTAGCTGGAT 795
Query 778 TCTCTAGATCAAGGGCTTTGTCAACTAAATTCAATTCTTCTCCACAAGAAGCTTCACGGC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 TCTCTAGATCAAGGGCTTTGTCAACTAAATTCAATTCTTCTCCACAAGAAGCTTCACGGC 855
Query 838 CTTTTGATTGTGACCGGGATGGTTTTGTGATAGGGGAAGGTTCAGGGGTTATAGTATTAG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 CTTTTGATTGTGACCGGGATGGTTTTGTGATAGGGGAAGGTTCAGGGGTTATAGTATTAG 915
Query 898 AGGAATATGAGCATGCAAAAAGACGCGGAGCAAAGATTTATGCTGAGCTTTGTGGATATG 957
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 916 AGGAATATGAGCATGCAAAAAGACGAGGAGCAAAAATTTATGCTGAGCTTTGTGGATATG 975
Query 958 GGATGTCAGGCGATGCACACCATATTACTCAACCCCCTGAAGATGGAAAGGGAGCTGTTT 1017
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 976 GGATGTCAGGCGATGCACACCATATTACTCAACCTCCTGAAGATGGAAAAGGAGCTGTTT 1035
Query 1018 TGGCCATGACACGCGCCTTAAGACAGTCTGGTCTGTGTCCAAACCAAGTTGATTATATAA 1077
|||||||||| || ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1036 TGGCCATGACGCGTGCCTTAAGACAGTCTGGTCTGTGTCCAAACCAAATTGATTATGTAA 1095
Query 1078 ACGCACATGCAACATCAACCCCAATAGGTGATGCTGTGGAAGCAAGAGCTATCAAGACCG 1137
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct 1096 ACGCACATGCAACATCAACCCCAATAGGCGATGCCGTGGAAGCGAGAGCTATCAAGACGG 1155
Query 1138 TTTTCTCTGAACATGCTACTTCAGGCACCTTGGCATTCTCCTCCACCAAGGGGGCTACTG 1197
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 TATTCTCTGAACATGCTACTTCAGGCACCTTGGCATTCTCCTCCACCAAGGGGGCTACTG 1215
Query 1198 GTCATCTTCTTGGAGCAGCTGGAGCAGTGGAAGCTATTTTCAGTATCCTTGCTATACATC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GTCATCTTCTTGGAGCAGCTGGAGCAGTGGAAGCTATTTTCAGTATCCTTGCTATACATC 1275
Query 1258 ACGGGGTTGCTCCTCTGACGTTGAATGTCAAGAATCCAGATCCCATGTTTGACCAGAGTT 1317
|||||||||||||| ||||| ||||||||||||||||||||||||| || ||| |||| |
Sbjct 1276 ACGGGGTTGCTCCTATGACGCTGAATGTCAAGAATCCAGATCCCATCTTCGACAAGAGGT 1335
Query 1318 TCATGCCTTTAACCACTTCGAAAAAGATGCTCGTTCGGACAGCAATGTCCAATTCGTTTG 1377
||||||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||
Sbjct 1336 TCATGCCTTTAACCACTTCGAAAAAGATGTTAGTTAGGACAGCAATGTCGAATTCGTTTG 1395
Query 1378 GCTTTGGAGGAACAAATGCATCTTTGCTCTTTGCCTCAATCTAAAGTTAT--AAACAACA 1435
||||||||||||||||||||||||||||||||||||| ||||||| || | ||||| ||
Sbjct 1396 GCTTTGGAGGAACAAATGCATCTTTGCTCTTTGCCTCTATCTAAACTTGTGTAAACAGCA 1455
Query 1436 TAGCAACAAATTT-GAACTGATCTTTCTTTGATTGCATAGAAGATTACATTAGCGAGTTC 1494
|||||| || ||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1456 TAGCAA-AAGTTTTGAACTGATCTTGCTTTGATTGCATAGAAGATTACATTAGTGAGTTC 1514
Query 1495 CCTATGAAATTACAGATAAAG 1515
|||||||||||||||||||||
Sbjct 1515 CCTATGAAATTACAGATAAAG 1535
> AT2G04530.1 | Symbols: CPZ, TRZ2 | Metallo-hydrolase/oxidoreductase
superfamily protein | chr2:1576709-1578741 FORWARD LENGTH=1294
Length=1294
Score = 63.9 bits (34), Expect = 4e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Minus
Query 1479 TTACATTAGCGAGTTCCCTATGAAATTACAGATAAAG 1515
|||||||||||||||||||||||||||||||| ||||
Sbjct 1246 TTACATTAGCGAGTTCCCTATGAAATTACAGACAAAG 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5