BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480096
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04560.1 | Symbols: | transferases, transferring glycosyl g... 2132 0.0
> AT2G04560.1 | Symbols: | transferases, transferring glycosyl
groups | chr2:1590306-1592667 REVERSE LENGTH=1418
Length=1418
Score = 2132 bits (1154), Expect = 0.0
Identities = 1319/1397 (94%), Gaps = 17/1397 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCAGATTCCAAAGACCAAACTTTGTTTCCCACTCTCAACATTCACCAAAAGATAC 60
|||||||||||| |||||| ||||||| ||||||| |||||||||||||| || ||||||
Sbjct 4 ATGTTTCAGATTACAAAGAGCAAACTTCGTTTCCCTCTCTCAACATTCACTAAGAGATAC 63
Query 61 TCATCATTTCAAGCTACTAAATCGGTGATCGACAAGGCTGCAATCGATGGGGAGCTGAGA 120
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 64 TCATCATTTCAAGCTGCTAAATCGGTGATTGACAAGGCTGCAATCGATGGGGAGCTCAGA 123
Query 121 GTTTTCATTGTCTCCGGCGAAGTTTCCGGCGATAACATTGGCTCTCGTCTTATGTCCTCG 180
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 124 GTTTTCATCGTCTCCGGCGAAGTTTCCGGCGATAACATCGGTTCTCGTCTTATGTCCTCG 183
Query 181 CTTAAAAAGCTCTCTCCTTTACCCCTTCGTTTCAATGGAGTTGGAGGATCCTTGATGTGC 240
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 184 CTTAAAAAGCTCTCTCCTTTACCCATCCGTTTCAATGGAGTTGGAGGATCCTTGATGTGC 243
Query 241 AAGCAAGGGTTGAATTCGTTGTTTCCAATGGAGGATTTGGCTGTAATGGGTTTGTGGGAG 300
||| |||| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 244 AAGAAAGGATTGAATTCGTTGTTTCCAATGGAGGATTTGGCTGTAATGGGTGTATGGGAG 303
Query 301 CTTTTGCCACATTTGTATAAATTCCGTGTGAAGTTGAAGGAGACTATTGATGCTGCGGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTTTTGCCACATTTGTATAAATTCCGTGTGAAGTTGAAGGAGACTATTGATGCTGCGGTT 363
Query 361 AAGTTTAAGCCACACATTGTTGTGACTGTTGATTCAAAGGGCTTCTCTTTTCGTCTACTT 420
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 364 AAGTTTAAGCCACATGTTGTTGTGACTGTTGATTCAAAGGGCTTCTCTTTCCGTTTACTT 423
Query 421 AAGGAGTTACGAGCTAGATACAATCGGCAGCGGTTGGAAAATTGTCCAGTGCATTTTCAC 480
||||||||||||||||||||||| | ||||||||||||||||||| | ||||||||||||
Sbjct 424 AAGGAGTTACGAGCTAGATACAAGCAGCAGCGGTTGGAAAATTGTTCTGTGCATTTTCAC 483
Query 481 TATGTCGCACCGTCGTTCTGGGCTTGGAAAGGAGGAGAGTCAAGACTTGGAGGTCTGTCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TATGTCGCACCGTCGTTCTGGGCTTGGAAAGGAGGAGAGTCAAGACTTGGAGGTCTGTCT 543
Query 541 GAATTCGTTGATCATCTTTTCTGCATTCTTCCGAACGAGGAAAGGGTTTGTAGGGAACAT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 544 GAATTCGTTGATCATCTTTTCTGCATTCTTCCGAACGAGGAAAGGGTTTGTAGGGAGCAT 603
Query 601 GGGGTTGAAGCAACCTTTGTTGGACATCCTGTTCTTGAGGATGCTTCTGAGTT----C-- 654
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 604 GGGGTTGAAGCAACGTTTGTTGGACATCCTGTTCTTGAGGATGCTTCTGAGTTCGACCTT 663
Query 655 -----AA--T-C-TTCCTCAGGAACTGAAACTTGAAGGCTTGAGTTTTAGCGAACACTCA 705
|| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GTGAGAAGGTGCAAGCCTCAGGAACTGAAACTTGAAGGCTTGAGTTTTAGCGAACACTCA 723
Query 706 ATACCTTCTGACTCCACTATCATTTCGGTGCTACCAGGGAGCAGATTACAAGAAGCTGAA 765
|||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||
Sbjct 724 ATACCTTCTGACTCCACTGTCATTTCGGTTCTACCGGGGAGCAGATTACAAGAAGTTGAA 783
Query 766 AGAATGCTACCCATATTTTGTAAAGCAATGAAGCTACTCAAAGACCCGTTTCCAAAACTA 825
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 784 AGAATGCTACCCATATTTTCCAAAGCAATGAAGCTACTCAAAGATCCGTTTCCAAAACTA 843
Query 826 GTAACGCTCATCCATGTTGCATCCAATAGTCAAGTTGATCATTACATTGGAGAATCCCTT 885
|||||||| ||||| || |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 844 GTAACGCTTATCCACGTCGCATCCAATAATCAAGTTGATCATTACATTGGAGAAT-CCTT 902
Query 886 -GGTGGGTGGCCAGTTCCAGCAATTTTAGTCCCTAGTGGATCCACTCAGCTTAAATATGA 944
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 903 CAGTGAGTGGCCAGTTCCAGCAATACTAGTCCCTAGTGGATCCACTCAGCTTAAATATGA 962
Query 945 TGCCTTTGGCGTGAGTCAGGCTGCATTATGCACTTCAGGAACAGTTGCTGTTGAGTTGCA 1004
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGCCTTTGGCGCGAGTCAGGCTGCATTATGCACTTCAGGAACAGTTGCTGTTGAGTTGCA 1022
Query 1005 GCTTGCTCGTCTACCTTCTCTTGTTGCTTACCGAGCACATTTTCTAACAGAGCTAATAAT 1064
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1023 GCTTGCTCATCTACCTTCCCTTGTTGCTTACCGAGCACATTTTCTAACAGAGCTATTAAT 1082
Query 1065 CCGTTACAAAGCCAAGATACCTTATATTTCTCTTCCAAACATTCTCCTAGACTCCCCAAT 1124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1083 CCGTTACAAAGCCAAGATACCTTATATTTCTCTCCCAAACATTCTCCTAGACTCCCCAAT 1142
Query 1125 CATTCCTGAAGCTTTGTTTCAAGCTTGCAACCCTTCAAATCTCGCCCCGATACTAGAGAG 1184
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1143 CATTCCTGAAGCTTTGTTTCAAGCTTGTAACCCTTCAAATCTCGCATCGATACTAGAGAG 1202
Query 1185 ACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCTGAGAAGTTGATACA 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 ACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCTGAGAAGTTGATACA 1262
Query 1245 GCTCTTGCATCCGTCAGAAAGCAGAATGGGCAACTCAATTCATTGCCCTGGTTTGGAATC 1304
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1263 GCTCTTGCATCCGTCAGAAAGCAGAATGGGCAACTCAATTCATTGCACTGGTTTGGAATC 1322
Query 1305 TCATCGATATACACCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGTCAAGCACTA 1364
|||||||||||| ||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1323 TCATCGATATACGCCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGCCAGGCGTTA 1382
Query 1365 AAAACTCTCGTGAATCA 1381
|||||| |||||| |||
Sbjct 1383 AAAACTATCGTGAGTCA 1399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5