BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480099
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04650.1 | Symbols: | ADP-glucose pyrophosphorylase family ... 2412 0.0
> AT2G04650.1 | Symbols: | ADP-glucose pyrophosphorylase family
protein | chr2:1621788-1624593 REVERSE LENGTH=1526
Length=1526
Score = 2412 bits (1306), Expect = 0.0
Identities = 1455/1525 (95%), Gaps = 17/1525 (1%)
Strand=Plus/Plus
Query 1 CAAAAAACTTGGGAATATCCGACTACAAAGATACCACCTTTTAATACAAAATCAGATCAT 60
||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1 CAAAAAACTTGAGAATATCCGACTACAAAGATACGACCTTTCAATACAAAATCAGATCAT 60
Query 61 CGTC--GTG------TTTAACGAATCTAGGCTTTT-TTGAA--TCGACATGTCGGAGGAG 109
|||| ||| ||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 61 CGTCGTGTGTTTAACTTTAACGAATCTAGG-TTTTATTGAATCTCGACATGTCGGAGGAG 119
Query 110 AAAGTCGTCGCCGTGATCATGGTTGGTGGTCCGACCAAAGGAACTCGATTTCGCCCATTA 169
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 120 AAAGTCGTCGCTGTGATCATGGTTGGTGGTCCGACCAAAGGAACTCGATTTCGCCCGTTA 179
Query 170 TCGTTCAATACACCGAAACCACTGATTCCTTTGGCTGGTCAACCTATGATTCATCATCCT 229
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCGTTCAATACACCGAAACCATTGATTCCTTTGGCTGGTCAACCTATGATTCATCATCCT 239
Query 230 ATTTCTGCTTGTAAAAAGATATCAAATCTTGCTCAGAtttttttGATTGGATTTTACGAG 289
|| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 240 ATCTCTGCTTGTAAAAAGATATCAAATCTGGCTCAGATTTTTCTGATTGGATTTTACGAG 299
Query 290 GAAAGAGAATTTGCTTTGTATGTCTCTTCAATATCTAACGAGCTGAAAATTCCAGTCCGA 349
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 300 GAACGAGAATTTGCTTTGTATGTGTCTTCAATATCTAACGAGCTGAAAATTCCAGTGCGA 359
Query 350 TACTTGAAAGAAGATAAGCCCCATGGTTCGGCTGGTGCTCTTTATTACTTTCGTGATAGA 409
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 TACTTGAAAGAAGATAAACCCCATGGTTCAGCTGGTGCTCTTTATTACTTTCGTGATAGA 419
Query 410 ATTATGGAAGAAAAACCGTCAAATGTTTTCCTCCTGAACTGTGATGTTTGCTGTTCTTTC 469
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 420 ATTATGGAAGAGAAACCGTCACATGTTTTCCTCCTCAACTGTGATGTTTGCTGTTCTTTC 479
Query 470 CCTCTTCAAGGCATACTTGACGCACATCGAAGATATGGTGGTATTGGAACTATGCTAGTA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCTCTTCAAGGCATACTTGACGCACATCGAAGATATGGTGGTATTGGAACTATGCTAGTA 539
Query 530 ATCAAGGTTTCTGCAGAAGCAGCCAGCCAATTTGGAGAATTGATAGCTGATCCTGATACT 589
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 540 ATCAAGGTTTCTGCAGAAGCAGCTAGCCAATTTGGTGAATTGATAGCTGATCCTGATACT 599
Query 590 AAAGAACTCCTGCATTATACAGAGAAGCCCGAGACTTTCGTCAGTGACTTGATAAACTGT 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAAGAACTCCTGCATTATACAGAGAAGCCCGAGACTTTCGTCAGTGACTTGATAAACTGT 659
Query 650 GGTGTCTATGTGTTTACCTCAGATATCTTCAATGCCATTGAAGAAGTATATAGCCAAATA 709
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 GGTGTCTATGTGTTTACTTCAGATATCTTCAATGCAATTGAAGAAGTATATAGCCAAATA 719
Query 710 AGAGACACATCTAGCAACTACCAATCTGCTACAAGGTCGGTTCCTACGGATTTTGTGAGA 769
|||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||
Sbjct 720 AGAGACACATCTAGCAACTACCAATCCGCTACAAGGTCTGTTCCTGCAGATTTTGTGAGA 779
Query 770 TTAGATCAAGATATATTGTCACCTCTTGCTGGAAAGAAGCAACTATACACATATGAGAAT 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTAGATCAAGATATATTGTCACCTCTTGCTGGAAAGAAGCAACTATACACATATGAGAAC 839
Query 830 AAGGATTTCTGGGAACAAATTAAGACTCCGGGGAAATCTTTGAAATGCTCGGCTTTATAT 889
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAGGATTTCTGGGAACAGATCAAGACTCCGGGGAAATCTTTGAAATGCTCGGCTTTATAT 899
Query 890 CTTTCCCAATTCCGCCAAACATCGCCTCATATTTTAGCTTCAGGAGATGGTACTAATAGG 949
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTTTCCCAATTCCGCGAAACATCGCCTCATATTTTAGCTTCAGGAGATGGTACTAATAGG 959
Query 950 AAACCGAA-TATAATTGGTGATGTTTATATTCACCCATCCGTAAAACTGCATCCAACCGC 1008
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AAACC-AACTATAATTGGTGATGTTTATATTCACCCATCCGTAAAACTGCATCCAACCGC 1018
Query 1009 AAAGATCGGTCCAAATGTGTCGATCTCAGCAAACGTTCGTGTTGGACCTGGTGTAAGGCT 1068
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1019 AAAGATCGGTCCAAATGTGTCGATATCAGCAAATGTTCGTGTTGGACCTGGTGTAAGGCT 1078
Query 1069 TATTAACTGCATAATCTTTGATGATGTTGAAATCAAGGACAATGCCGTTGTTATAAACTC 1128
||||| |||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 1079 TATTAGCTGCATAATCTTAGACGATGTTGAAATCAAGGAGAATGCTGTTGTTATAAACTC 1138
Query 1129 AATTATCGGATGGAAATCTTCTATAGGTAGATGGTCAAGAGTTCAAGCTAGTGGAGATTA 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AATTATCGGATGGAAATCTTCTATAGGTAGATGGTCAAGAGTTCAAGCTAGTGGAGATTA 1198
Query 1189 TAATGAGAGGCTTGGGATTACCATTCTTGGTGAGGCTGTAACTGTAGAAGATGAAGTTGC 1248
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1199 CAATGACAGGCTTGGGATTACCATTCTTGGTGAGGCTGTAACTGTGGAAGATGAAGTAGC 1258
Query 1249 AGTCATAGGAAGCATTGTTCTCCAGAATAAGACTCTTAATGTTAGTGTTCAAGATGATAT 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGTCATAGGAAGCATTGTTCTCCAGAATAAGACTCTTAATGTTAGTGTTCAAGATGATAT 1318
Query 1309 AATCTTGTGATTTATCACCATGATTATCGTTCGGAttttttt-ctttttAATTGAAACAG 1367
||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct 1319 CATCTTGTGATTTATCACAATGATTATCGTTTGGATTTTTTTTCTTTTTAATTGAAACAG 1378
Query 1368 AAAAAGAATTACAGAATTGTATCTTACATGAATTGAGTTCACAGGATTAGATTTTGAGTT 1427
| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGAAACTTTTACAGAATTGTGTATTACATGAATTGAGTTCACAGGATTAGATTTTGAGTA 1438
Query 1428 AGTAGAA-CTATGGAAGATTTGTAAACTCTCATTGTACTTTGTTTTTATATACTAAAAAG 1486
||| ||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||
Sbjct 1439 AGT-GAAACTATGGAAGATTTGTAAACTCTCACTGTACTTTGTGTTTAGATACTAAAAAG 1497
Query 1487 ATTTTAGAAGAAAGAGTTTTAAAAG 1511
|||||||||||||||||||||||||
Sbjct 1498 ATTTTAGAAGAAAGAGTTTTAAAAG 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74547809325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5