BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480102
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04690.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase fam... 1234 0.0
> AT2G04690.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase family
protein | chr2:1644497-1646355 FORWARD LENGTH=940
Length=940
Score = 1234 bits (668), Expect = 0.0
Identities = 849/930 (91%), Gaps = 38/930 (4%)
Strand=Plus/Plus
Query 1 AAGAGAGATCCAAAGAGATAAGAATAACATTAAAGTTCAAAGTTCAAACCCATGTCTCGG 60
|||||||||||||||||||||||||||| | || |||||| | | | ||||||
Sbjct 1 AAGAGAGATCCAAAGAGATAAGAATAAC-----A-TT-AAAGTT---A--C-TCTCTCGG 47
Query 61 TATTGGTATGACGACGAATTGACTTTAAAATTTTC-TTGGTCATCTTTTGTCAAATTCGT 119
| | ||||||||||||||||||| ||||||||||| || ||||||||||||||| |||||
Sbjct 48 TGTGGGTATGACGACGAATTGAC-TTAAAATTTTCGTTAGTCATCTTTTGTCAATTTCGT 106
Query 120 TTCCATCA---TT-ACACAAAAAGCATGGAActtcaagtcc---ttcttcgtccaa---- 168
||| |||| || |||||||||| |||||||||||||||| ||||||||||||
Sbjct 107 TTCAATCATTTTTGACACAAAAAGTATGGAACTTCAAGTCCTTGTTCTTCGTCCAATCTT 166
Query 169 --tcttcttcttcttc--c-tcttgacaattttacaacaatcttcttctGCTCGGATTCT 223
|||||||||||||| | ||||||||||| |||||||||| |||||||||||| ||||
Sbjct 167 CTTCTTCTTCTTCTTCGTCTTCTTGACAATTCTACAACAATCCTCTTCTGCTCGGGTTCT 226
Query 224 TACAATCTCTAAGCCTGATAGACATGACTACGCCGCAAGTGCTCGTTGGCTTGTCTCTCA 283
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TACAATCACCAAGCCTGATAGACATGACTACGCCGCAAGTGCTCGTTGGCTTGTCTCTCA 286
Query 284 GAATTCTTGGGGTGTTCTTAGCACACTATCCGTCGATCATGAAGGCGCTCCGTTTGGGAA 343
||||||||||||||||||||||||||||||||| |||||| |||||||||| || |||||
Sbjct 287 GAATTCTTGGGGTGTTCTTAGCACACTATCCGTTGATCATAAAGGCGCTCCCTTCGGGAA 346
Query 344 TGTTGTATCGTTTAGTGATGGTTTACCCGAGAAAGGCAACGGTATACCATACTTTTACTT 403
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 347 TGTTGTATCGTTTAGTGATGGTTTACCCGAGAAAGGTAACGGTATACCTTACTTTTACTT 406
Query 404 AACAACTCTTGATCCAACTGCAAGAAACGCACTAAAAGACCAGAGAGCTTCACTCGCAAT 463
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 407 AACAACACTTGATCCAACTGCAAGAAACGCACTTAAAGACCAGAGAGCTTCACTTGCAAT 466
Query 464 TAGTGAATCTCC-CGTTGGAACTTGTAAAAGAGATCCAATGAATCCTACTTGCTCTAAAC 522
|||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 467 TAGTGAATCTCCTC-TTGGAACTTGTACAAGAGATCCAATGAATCCTACTTGCTCTAAAC 525
Query 523 TAACTCTTACCGGAAAGTTACTGATATTGGATGAAGGATCTGAGGAAGCAGAAGTAGCGA 582
|||| |||||||| ||||| ||||||||||| | |||||||||||||||||||||||| |
Sbjct 526 TAACCCTTACCGGGAAGTTGCTGATATTGGAAGGAGGATCTGAGGAAGCAGAAGTAGCCA 585
Query 583 AAAAAGCTTTATTCACAAAGCATCCAGAGATGATGGATTGGCCTGAGGATCATGATTTCC 642
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 586 AAAAGGCTTTATTCACAAAGCATCCAGAGATGATGGATTGGCCTAAGGATCATGATTTCC 645
Query 643 GCTT-TTTCAAACTCGAGATCATCGATATATTTCTGATCAATTGGTATGGTGGAGCTAAA 701
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 646 GCTTCTTT-AAACTCGAGATCATCGATATATTTCTCATCAATTGGTATGGTGGAGCTAAA 704
Query 702 CCCATCACTGTAGATGAATACCTTCATGCCAAGTCGATCAAAGTCGTTTCCTTTTTATAA 761
|| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 705 CCTATCACTGTAGATGAATACCTTCATGCCAAGTCGATCAAACTCGCTTCCTTTTTATAA 764
Query 762 TAACTCACCGGAATCAAGCAAATGGTGAAGCAAGAAAATGTATATTGGAT-ACACAATAA 820
|||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 765 TAACTCACAAGAATCAAGCAAATGGTGAAGCAAGAAAATGTATATTGGATGA-ACAATAA 823
Query 821 AATGTGTGTAACTGTTTCTGTAAATGACTCTTTGTTTTCGAC-ATGATAGATTTTAAAAT 879
|| |||||||||||||||||||||| |||||||||||| ||| || |||||| |||||||
Sbjct 824 AAAGTGTGTAACTGTTTCTGTAAATAACTCTTTGTTTTGGACCATAATAGATATTAAAAT 883
Query 880 CTCCTGTAAATTACCACAAAGCAATTTCAA 909
||| ||||||||||| ||||||||||||||
Sbjct 884 CTCTTGTAAATTACCTCAAAGCAATTTCAA 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5