BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480104
Length=1785
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04740.1 | Symbols: | ankyrin repeat family protein | chr2:... 2728 0.0
> AT2G04740.1 | Symbols: | ankyrin repeat family protein | chr2:1657121-1659689
FORWARD LENGTH=1879
Length=1879
Score = 2728 bits (1477), Expect = 0.0
Identities = 1686/1787 (94%), Gaps = 13/1787 (1%)
Strand=Plus/Plus
Query 1 AAAATGTCTCCAATTGAGAATTCCTCATCTTGGACACTCGAATCCGACCTAGAAGATCTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 AAAATGTCTCCAATTGAGAATTCCTCATCTTGGACACTCGAATCCGACCTAGAAGATCTA 73
Query 61 GACCTTGACCTCCAAGATTACAAACCATCCGTACCATTAAAGAAAGTACCAAACGGAGAC 120
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 74 GACCTCGACCTCCAAGACTACAAACCATCCGTACCATTAAAGAAAGTCCCAAACGGAGAC 133
Query 121 ATTTTCGAAGCTTCACGCGCCGGTGACGTCGATAGACTCCGGTACCTTCTTGAAACCGGA 180
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 134 ATTTTCGAAGCCTCACGCGCCGGTGACGTCGATAGACTCCGGTACCTTGTTGAAACCGGA 193
Query 181 GTTAACGTCAACGCACGTGACCGATGGGACTCTGTTGCTCTTTACTACGCTTGTCTCGCT 240
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 194 GTCAACGTCAACGCACGTGACCGTTGGGACTCTGTTGCTCTTTACTACGCTTGTCTCGCT 253
Query 241 GGTCATATTGACTCTGCTCGATTGCTTTTAGAGAATGGTGCGATTTGCTCTGAACATACT 300
||||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 254 GGTCACATAGACTCTGCTCGATTGCTTCTAGAGAACGGTGCGATTTGCTCTGAACATACT 313
Query 301 TTTGATGGTGATCGTTGTCATTATGCTTCTCTTAATTTAAGGATTAGGAAGCTTCTTAAG 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 314 TTTGATGGTGATCGTTGTCATTATGCTTCTCTTAATTTAAGGATTCGGAAGCTTCTGAAG 373
Query 361 GCTTTTGAAGCTCGTCCTCCTCCTCTTGGTCCTTTGCAAGCTTCTCTTAGAGATACGTTT 420
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 374 GCTTTTGAAGCTCGTCCTCCTCCTCTTGCTCCTTTGCAAGCTTCTCTTAGAGATACCTTT 433
Query 421 TTGGGATGTTGTCATAATCGAGATTAT-TTGAAACAAGAAGCTTTTGATGCTACTAATCT 479
||||||||||||||||||||||||||| || |||||||| || | |||||||
Sbjct 434 TTGGGATGTTGTCATAATCGAGATTATCTT-CAACAAGAA------GAAG---CTAATCT 483
Query 480 TGATGTTTCTGATAATCCGAGTGAGTTTGGTAGTTCGAATTACTTCCCACCGGATGTGAT 539
|||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 484 TGATGTCTCTGATACTCTGAGTGAGTTTGGTAGTTCGAATTACTTTCCACCGGATGTGAT 543
Query 540 GTTCTTTGTGCAAGGTAGACCAATTGAGGCACACAGGGTTATCTTAAGTGCTCGATCTCC 599
||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 544 GTTCTATGTGCAAGGTAGACCTATTGAAGCACACAGGGTTATCTTAAGTGCTCGATCTCC 603
Query 600 ATTTTTCAAGCAGAAGTTTGAGAATGAATGGAAAGACCGGGGAGAAGTTCGGTTTTCGAA 659
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 604 GTTTTTCAAGCAGAAGTTTGAGAATGAATGGAAAGACCGGAGAGAAGTTCGGTTTTCGAA 663
Query 660 AGAGAAGCTTTCGTATCCTGCTCTCTGTAGCCTTATTCACtttttttACTCAGGTAGGTT 719
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||
Sbjct 664 AGAGAAGCTTTCGTATCCTGCTCTCTGTAGTCTTATTCACTTCTTTTATTCAGATAGGTT 723
Query 720 GGAGATATCTGTTGATGATATGGAAGATCTTGTTAGGATCTGCAAAGTTTGTAAATGTGA 779
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 724 GGAGATATCTGTTGATGATATGGAAGATCTTGTTAGGATTTGCAAAGTTTGTAAATGTGA 783
Query 780 ATCACTGCAGAAAATCATTGAGAAGGAACTGATTCACCAGAAG-TATGCTGAGTACAAGA 838
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 784 ATCACTGCAGAAAATCATTGAGAAGGAACTGATTCACCAG-AGATATGCTGAGTATAAGA 842
Query 839 CTCATAGAGACCTTGATAACTCCATGAAACGGTTCATCTTACAGGGCATATCTCTTCCAG 898
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 843 CTCATAGAGATCTTGATAACTCCATGAAACGGTTTATCTTACAGGGTATATCACTTCCAG 902
Query 899 AGGAAGACAGGCTTCCTGCTTCTTTGCATAGGATTCTTCGAGTTTCCCTTGCGAAATCGT 958
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 903 AGGAAGACAGGCTTCCTGCTTCTTTGCATAGGATTCTTCGAGTTTCACTAGCGAAATCGT 962
Query 959 TTGTTGGTGATGTAATAGATTCATCTGTTGGGGATATGAGAGTCGGAGATTCTGTGGATA 1018
|||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| |
Sbjct 963 TTGTTGGTGATGTAATAGATTCATCTGTTGGGGATACGAGAGTTGGTGATTCTGTGGAAA 1022
Query 1019 GTCTTGCTGATGTTTGTGTTAAAGTTGATAAACGAACTTTCTATTGCCATCAAGTTATTC 1078
||||||||||||||||||||| |||||||||| ||| |||||| ||||||||||||||||
Sbjct 1023 GTCTTGCTGATGTTTGTGTTAGAGTTGATAAAAGAAATTTCTACTGCCATCAAGTTATTC 1082
Query 1079 TAGCTTCGAGATCAGAGTACTTCAGAGCACGATTATCCCGAGTAAATGATTTCCATGAGG 1138
||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 1083 TAGCTTCAAGATCAGAGTACTTCAGAGCACGATTATCACGAGTGAATGATTTTCATGAGG 1142
Query 1139 GAAAAAATGGGTTGCTGGGTGATACTCTTCCATATCTCGAAGAACATGATTTGAGCGCAG 1198
| || ||||| |||| ||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 1143 GGAAGAATGGTTTGCCGGGTGATACTCTTCCATTTCTTGAAGAACATGATTTGAGTGCAG 1202
Query 1199 AGGCTTTCGAGAAGATGATTGAGTATATGTACACTGATGGCTTAAAGGAGATCAGTCCGA 1258
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1203 AGGCTTTTGAGAAGATGATTGAGTATATGTACACTGATGGCTTAAAGGAGATCAATCCGA 1262
Query 1259 GTCAGGCTGAGGAGATCTTTGATGTTTCATCTCGCTACTTGCTATTTCCGCTAAAACGTG 1318
||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||
Sbjct 1263 ATCAGGCTGAGGAGATCTTTGATGTTGCATCTCGCTACTTGCTGTTTCCGCTTAAACGTG 1322
Query 1319 CTGTGGCTGACGCCTTGTTACCTCACTTGGAATCTGCGACACCTGCAGAACTCTGTCAGT 1378
||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |
Sbjct 1323 CTGTGGCTGACGCCTTGTTGCCTCACTTGGAAACTGCCACACCTGCAGAACTCTGTCAAT 1382
Query 1379 GGCTGGTTTTGTCAGATATGTACGGCGTATTGAAGATAAGAGAGTACTGCCTAGACTTGG 1438
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 1383 GGCTGGTTTTGTCAGATATGTACGGAGTGTTGAAGATAAGAGAGTACTGCCTGGACTTGG 1442
Query 1439 TTGCTTGTAATTTCGAGGCATTTGTTGAAACCCGCGAGTTCAGAGCAATGCTATTAACAT 1498
||||||||||||| ||||||||||||||||||| ||||||||| |||||| |||||||||
Sbjct 1443 TTGCTTGTAATTTTGAGGCATTTGTTGAAACCCACGAGTTCAGGGCAATGTTATTAACAT 1502
Query 1499 TGCCTCCACCATCAGGAGACTCTTCACTTCGAACCACAGTTCCAAGTGCACCAGGTGCCA 1558
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1503 TGCCTCCACCATCAGGAGACTCTTCACTTCGAACCACTGTTCCAAGTGCACCAGGTGCCA 1562
Query 1559 TGATGACCACGGACCAAGGGAATCTCCTTGATGATCTGAGAGAGAAGTGGCTTGAAGCAG 1618
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 TGATGACCACAGACCAAGGGAATCTCCTTGATGATCTGAGAGAGAAGTGGCTTGAAGCAG 1622
Query 1619 AGGCTTTAGAGCTTGACATGAGAGACGAGAGTGCTTTGATTTTTGATAAGCGCCTTGCTA 1678
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1623 AGGCTTTAGAGCTTGACATGAGAGACGAGAGTGCTTTGATTTTCGATAAGCGCCTTGCAA 1682
Query 1679 TGCTCGTGGAAATGGCAGAGCGAGAGAAATCCGAATCAGAAGCTGAGGACTATAAACACA 1738
|||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1683 TGCTTGTGGAAATAGCAGAGCGAGAGAAATCCGAATCAGAAGCTGAGGACTACAAAGACA 1742
Query 1739 ACAGCGCATGATTATTGGTTTTCCTTAAGACAAGTTTTGACTCTCTT 1785
||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct 1743 CCAGCGCATGATTATTGGTTTTTCTAAAAACAAGTTTTGAGTCTCTT 1789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88302758655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5