BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480107
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04780.1 | Symbols: FLA7 | FASCICLIN-like arabinoogalactan 7... 1493 0.0
> AT2G04780.1 | Symbols: FLA7 | FASCICLIN-like arabinoogalactan
7 | chr2:1676742-1678455 FORWARD LENGTH=1285
Length=1285
Score = 1493 bits (808), Expect = 0.0
Identities = 932/991 (94%), Gaps = 12/991 (1%)
Strand=Plus/Plus
Query 454 AGTGGGAGAGTTCAAGAAACGATGGCAAAGATGCAATTATCAATCTTTATCGCTGTCGTC 513
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGTAGGAGAGTTCAAGAAACAATGGCAAAGATGCAATTATCAATCTTTATCGCTGTCGTT 356
Query 514 GCGCTTCTCGTCTGCTCTGCATCTGCTAAAACCGCAAGCCCTCCAGCTCCAGTGCTGCCA 573
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GCGCTTATCGTCTGCTCTGCATCTGCTAAAACCGCAAGCCCTCCAGCTCCAGTGCTGCCA 416
Query 574 CCGACACCAGCTCCAGCACCAGCCCCGGAAAATGTGAATCTCACCGCA-CTTTTAAGTGT 632
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 417 CCGACACCAGCTCCAGCACCAGCCCCGGAAAATGTGAATCTCACCG-AGCTTTTAAGTGT 475
Query 633 AGCTGGTCCGTTCCACACATTCCTTGACTACCTTCTCTCAACTGGAGTCATTGAGACATT 692
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 476 AGCTGGTCCGTTCCACACATTCCTCGACTACCTTCTCTCGACTGGAGTCATTGAGACTTT 535
Query 693 CCAAAACCAAGCTAACAACACCGAGGAAGGCATCACAATCTTTGTCCCCAAGGATGATGC 752
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 536 CCAAAACCAAGCTAACAACACTGAGGAAGGCATCACAATCTTTGTCCCTAAAGATGATGC 595
Query 753 TTTCAAGGCTCAGAAGAATCCTCCTTTGTCAAATCTGACAAAGGATCAGCTCAAGCAGCT 812
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 596 TTTCAAAGCTCAGAAGAATCCTCCTTTGTCAAATCTCACAAAGGATCAGCTTAAGCAGCT 655
Query 813 TGTTCTCTTCCATGCTCTTCCTCATTACTATTCGCTTTCGGAATTCAAGAACTTGAGCCA 872
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGTTCTCTTCCATGCTCTGCCTCATTACTATTCGCTTTCGGAATTCAAGAACTTGAGCCA 715
Query 873 ATCTGGTCCAGTGAGTACCTTTGCTGGTGGTCAATACTCCTTGAAATTCACAGATGTTTC 932
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 716 ATCTGGTCCAGTGAGCACCTTTGCTGGTGGTCAATACTCCTTGAAATTCACTGATGTTTC 775
Query 933 TGGCACGGTTCGAATTGATTCTCTATGGACCAGGACTAAAGTCAGCAGCAGTGTTTTCTC 992
|||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 776 TGGCACGGTTAGGATTGATTCTTTATGGACCAGGACTAAAGTCAGCAGCAGTGTTTTCTC 835
Query 993 CACTGACCCTGTTGCTGTTTACCAAGTTAACCGCGTGCTTCTACCCGAAGCAATCTTTGG 1052
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 836 CACTGACCCTGTTGCGGTTTACCAAGTGAACCGCGTGCTTCTACCCGAAGCAATCTTTGG 895
Query 1053 TACTGATGTCCCTCCAATGCCGGCTCCAGCTCCTGCTCCTGTTGTTACCGCTCCTTCCGA 1112
||||||||||||||||||||| |||||||||||||||||| | |||| |||||||| ||
Sbjct 896 TACTGATGTCCCTCCAATGCCTGCTCCAGCTCCTGCTCCTATCGTTAGTGCTCCTTCGGA 955
Query 1113 TTCTCCTTC--T-GCTGATTCTGAAGCCAATTCTACTTCACCAAAGTCCTCACACAAGAA 1169
||||||||| | ||||||||||||| | | | |||||||||||||||||||||||||
Sbjct 956 TTCTCCTTCAGTTGCTGATTCTGAAGG-AGCT-T-CTTCACCAAAGTCCTCACACAAGAA 1012
Query 1170 CTCAGGACAGAAGCTGCCAGTTGCTCCAATCGCCATGGTTCTTTCCGGTTTGGTGGCATT 1229
||| ||||| ||||||| | |||| |||||| |||||||| |||||||||||||||||||
Sbjct 1013 CTCCGGACAAAAGCTGCTACTTGCACCAATCTCCATGGTTATTTCCGGTTTGGTGGCATT 1072
Query 1230 GTTCTTGTGATCAAATGGTTTTGCAGATTGAGT-ATGTTCT-AAGTTACAATGTGAAAGA 1287
||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 1073 GTTCTTGTGATCAGATGGTTTTGCAGATTGAGTTATGTTTTTAAGTTACAATGTGAAAGA 1132
Query 1288 TTGTATTACATCATCCCAattatctttt-gatttttgaaacccattttttattatacatt 1346
|||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1133 TTGTATTACATCATTTGAATTGTCTTTTTGATTTTTGAAACCCATTTTTTATTATACATT 1192
Query 1347 tttatcattattattgtt-gtcattaccattgttgtGAATTGAGATTGTTCCTCCATTTT 1405
|||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1193 TTTATCATTATTATTGTTTGTCATTACGATTGTTGTGAATTGAAATTGTTCCTCCATTTT 1252
Query 1406 GCTTTTCTGTAGTTGATTTTGCTTCATTTGC 1436
|||||||| ||||| ||||||||||||||||
Sbjct 1253 GCTTTTCTTTAGTTAATTTTGCTTCATTTGC 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70782768450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5