BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480108

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04790.2 | Symbols:  | unknown protein; Has 35333 Blast hits...   710    0.0  


> AT2G04790.2 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:1679516-1680537 
FORWARD LENGTH=717
Length=717

 Score =  710 bits (384),  Expect = 0.0
 Identities = 474/515 (92%), Gaps = 15/515 (3%)
 Strand=Plus/Plus

Query  1    CAGAGGAACACAATGGCCTCTCTCTTCACACCATCACCAACCACCAGGAGTGGTGGCGGA  60
            |||| ||| |||||||||||||||||||||||||||||||||||||  ||| || | |||
Sbjct  1    CAGAAGAAGACAATGGCCTCTCTCTTCACACCATCACCAACCACCACTAGTAGTAGTGGA  60

Query  61   GACGCCGTCTATGTAGCGGCGGTGCCGCTTAAAGCAGCGGCCGGTCCGCCGCAGCTTATT  120
            ||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  61   GACACCATCTATGTAGCGGCGGTGCCGCTTAAAGCCGCGGCCGGTCCGCCGCAACTTATT  120

Query  121  ATGTCAATGGCTTACTCACTTAATCTCTCGAATTTACAACATTTCATGGTCCTCATCAAA  180
            |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct  121  ATGTCAATGGCTTACTCACTTAATATCTCAAATTTACAACATTTCATGGTCCTCATCAAA  180

Query  181  CCTTCTTCTCCAATTCGTCAAGAGG-TCAGTGTGTTTGATTTTCAGCCACGTAATCCAGA  239
            |||||||||||||| |||||||||| ||  |||||||||||||||||||||||| || ||
Sbjct  181  CCTTCTTCTCCAATCCGTCAAGAGGTTC-TTGTGTTTGATTTTCAGCCACGTAACCCTGA  239

Query  240  AAGTATAGAAGCAGCAATCTCAGTTTTGTCAGGAAATTTGATTCCAGGTGTAGTTCTTG-  298
            ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| 
Sbjct  240  AAGCATAGAAGCAGCAATCTCACTTTTGTCAGGAAATTTGATTCCAGGTGTAGTT-TTGC  298

Query  299  AAAGAAGGTTGAAGAAGGTTCCAAGACAAAGATGTTGGTTGGTTGGATCATGTAAAGGG-  357
            |||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||| 
Sbjct  299  AAAGAAGGTTGAAGAATGTTCCAAGACAAAGATGTTGGATGGTTGGACCATCTAAAGGGA  358

Query  358  A--ATGCTATGGAAATGGCAACT-GAGTTTAAT-GGCTCATGGGAGACTGATCTT-AGAG  412
            |  |||||||||||||||||| | |||||||||  | ||||||||||||||| || ||||
Sbjct  359  ATGATGCTATGGAAATGGCAA-TGGAGTTTAATAAG-TCATGGGAGACTGAT-TTGAGAG  415

Query  413  TTGGATTTCATGATTGCCGAAACTATACCAATGAACTTGTCCAACATCTTACCGGAGAAA  472
            |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  416  TTGGATTTCATGATTGCCGACATTATACCAATGAACTTGTCCAACATCTTACCGGAGAAA  475

Query  473  TGCAAATCT-TGGAGCGACTTCCAAGAAGCTAATG  506
            ||||||| | |||||||||||||||||||||||||
Sbjct  476  TGCAAAT-TGTGGAGCGACTTCCAAGAAGCTAATG  509



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24162624707


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5