BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480112

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04795.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   676    0.0  


> AT2G04795.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G35732.1); 
Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1682953-1683475 
FORWARD LENGTH=523
Length=523

 Score =  676 bits (366),  Expect = 0.0
 Identities = 473/523 (90%), Gaps = 13/523 (2%)
 Strand=Plus/Plus

Query  1    AAACTCATTTGCTCTCTCCAAACACCAAAACCCaaaaaaaGTTTTAAAAGAGGTAAGACT  60
            ||||||||||||||||||||||||||||||||||||| |||||| ||| |||  || |||
Sbjct  11   AAACTCATTTGCTCTCTCCAAACACCAAAACCCAAAATAAGTTTCAAAGGAGAAAACACT  70

Query  61   AAAGATGCTGAAGATGTTGTCTATATTAAGGAGAAACCTTCAGAATCTTCGAAAAAGCCC  120
            ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  71   AAAGATGCTCAAGATGTTGTCTATATTAAGAAGAAACCTTCAAAATCTTCGAAAAAGCCC  130

Query  121  ACGTGTGGCGGACGAAAGCGCCCTGCCTTCGACGACAGTTAACGGAGATCACGGGAGAGG  180
             || |||||||||||||||||  ||||||| ||||| ||||| |||||||||||| ||||
Sbjct  131  GCGGGTGGCGGACGAAAGCGCGTTGCCTTCAACGACGGTTAATGGAGATCACGGGGGAGG  190

Query  181  AAACGGGAGTAACGGTGGAATGATGAAGTTTCCGTTATCGATCATGTCATGTTTTGCGGT  240
            ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||
Sbjct  191  AAACGGGAGTAACGGTGGAATAATGAAGTTTCCGCTATCGATCATGTCATGTTTTTCGGT  250

Query  241  TCCACGAGTAAGCAGGACAGATGGTGTTTGGGTGTCGGGAAATTATGGAAGGGTCTCGGA  300
            ||||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||
Sbjct  251  TCCACGAGTTAGCAGGGCAGATGGTGTGTGGGTGTCGGGAGATTATGGAAGGGTCTCGGA  310

Query  301  CGTTAACCATCTCATGGTTTGTGATGGCATGAGATACGCTCTCTTAATGTAATTATATAT  360
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  311  GGTTAACCATCTCATGGTTTGTGATGGCATGAGATACGCTCTCTTAATGTAATTATATAT  370

Query  361  AT--CTCGACTTTATTTAGCTAGTAATACACATTTCTTTTGTGTTGATGGC-TTTATATT  417
             |  |||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct  371  CTAGCTCGACTTAATTTAGCTAGTAGTACATATTTCTTTTGTGTTGATGGCGTTTATATT  430

Query  418  AGGGAATCTAGTGAGATATACAAAGGCTGTTCACTTTTTTCCTTTTGTGTCCATGAGGTT  477
            |||| || |||||||||||||||| ||| |||||||    | |||| | || ||| | ||
Sbjct  431  AGGGCATTTAGTGAGATATACAAAAGCTTTTCACTT----C-TTTT-T-TC-ATG-G-TT  480

Query  478  TGTGTTTCTTAAAGAAGATGTCTTAGCTAGGAATATTTCACTT  520
            ||||||| |||||||| || |||||||||||||||||| ||||
Sbjct  481  TGTGTTTATTAAAGAACATATCTTAGCTAGGAATATTTAACTT  523



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24865902765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5